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Ivo edited this page Apr 24, 2017
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course number: 550441 (Bioinformatics for Next Generation Sequencing)
| Date | Topic | Responsible |
|---|---|---|
| 06.02 | Experimental design, sequencing technologies, statistics | Frank Oliver Glöckner |
| 13.02 | Docker Introduction | Renzo Kottmann, Kim |
| 20.02 | QC Tools: Clipping (BBduk), Merging (BBmerge, PEAR) | Frank Oliver Glöckner, Kim |
| 27.02 | QC Tools: Trimming (BBduk), Visualisation (FASTQC) | Frank Oliver Glöckner, Kim |
| 06.03 | Docker II | Renzo Kottmann, Kim |
| 13.03 | Gene prediction (FragGeneScan), Annotation (HMMER) | Frank Oliver Glöckner, Kim |
| 20.03 | Read mapping (bowtie, samtools) | Frank Oliver Glöckner, Kim |
| 27.03 | rDNA from metagenomes (SortMeRNA) | Ivaylo Kostadinov, Kim |
| 03.04 | Taxonomic classification with SILVA(ngs); Spring Break Task | Ivaylo Kostadinov, Kim, all |
| 10.04 | Spring Break (see Spring Break Task) | NA |
| 17.04 | Spring Break (see Spring Break Task) | NA |
| 24.04 | Presentation, Interpretation of Spring Break Task | all |
| 01.05 | Public holiday | NA |
| 08.05 | Metadata, Submission | Ivaylo Kostadinov, Kim |
| 15.05 | Q&A, Feedback | all |
| Date | Topic | Responsible |
|---|---|---|
| 20.02 | BBTools, PEAR | Reeve Ahmed, Maleeha Aziz |
| 27.02 | FASTQC | Brooke Fitzgerald |
| 13.03 | FragGeneScan, HMMER | Hote Bhagyashree, Manas Joshi |
| 20.03 | Bowtie, Samtools | Kim Philipp Jablonski |