BehaviourAnalysis

This program was created to manage and analyze data generated by the behavioural assays performed in the Chatzigeorgiou lab, using the custom imMobilize acquisition and experimental protocol system, and the toxtrac tracking software.

Getting started

Requires python 3.6+

Download

Clone the repository, or download and extract the repository.

git clone https://github.com/DanielDondorp/BehaviourAnalysis.git`

Enter the project directory

cd BehaviourAnalysis

Recommended: set up a python virtual environment

python3 -m venv BehaviourAnalysisEnv
source ./BehaviourAnalysisEnv/bin/activate

Install requirements

pip install -r requirements.txt

run

python behaviour_analysis