Parallel image processing code that identifies C. elegans in images
David Biron Assistant Professor Department of Physics email@example.com
Nicholas Labello Scientific Computing Consultant UChicago Research Computing Center firstname.lastname@example.org
This code is an ongoing research project. You are encouraged to contact us before installing it.
The requirements to run the code are a Python 2.7 environment and the addons NumPy, SciPy, PyMorph, and Scikits-Image. MPI4Py is required for multi-node parallelism.
Run on the University of Chicago Research Computing Center Midway cluster (rcc.uchicago.edu). The CPU model is Intel Xeon CPU E5-2670 0 @ 2.60GHz.
Time to process 1000 images
Cores | Visualization-Off 8 | 144.5 16 | 85.5 32 | 46.0 64 | 25.7