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SigProfiler/SignatureAnalyzer (mutational signature analysis) #6

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rdmorin opened this issue Feb 9, 2020 · 2 comments
Closed

SigProfiler/SignatureAnalyzer (mutational signature analysis) #6

rdmorin opened this issue Feb 9, 2020 · 2 comments
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@rdmorin @ppararaj
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@rdmorin
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rdmorin commented Feb 9, 2020

We should try to adapt the wrapper code Luka and Eric Zhao provided into a portable pipeline. I'm sure Luka would appreciate having his code made more portable. Perhaps he even wants to be involved in the process.
@BrunoGrandePhD BrunoGrandePhD added the new-module New module label Apr 7, 2020
@BrunoGrandePhD BrunoGrandePhD changed the title Alexandrov method mutational signatures SigProfiler/SignatureAnalyzer (mutational signature analysis) Apr 7, 2020
@rdmorin
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rdmorin commented Apr 7, 2020

We should test out the methods from PCAWG. It's not worth implementing a module for the older method as long as the more sophisticated ones work in our hands.

@BrunoGrandePhD BrunoGrandePhD added new-module New module and removed new-module New module labels Apr 7, 2020
@Kdreval
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Kdreval commented Oct 1, 2021

This has been resolved by Prasath's Sigprofiler module in PR #189

@Kdreval Kdreval closed this as completed Oct 1, 2021
gillissierra pushed a commit that referenced this issue Jun 29, 2023
@rdmorin
Merge pull request #6 from LCR-BCCRC/cnv2igv
0ef0cf6 
added support for including Battenberg LOH
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@BrunoGrandePhD @rdmorin @ppararaj @Kdreval