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  1. AlgoLab/malva AlgoLab/malva Public

    genotyping by Mapping-free ALternate-allele detection of known VAriants

    C 9 4

  2. AlgoLab/shark AlgoLab/shark Public

    Mapping-free software for fishing relevant reads in an RNA-Seq sample

    C++ 18 1

  3. Parsoa/SVDSS Parsoa/SVDSS Public

    Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)

    C++ 41 4

  4. AlgoLab/galig AlgoLab/galig Public

    A graph aligner

    Python 24 12

  5. ppvcf ppvcf Public

    Library for the parallel parsing of VCF files

    C++ 1

  6. rust-bio/rust-bio rust-bio/rust-bio Public

    This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

    Rust 1.5k 202