@AlgoLab

AlgoLab - Experimental Algorithms Lab

Pinned repositories

  1. LightStringGraph

    Lightweight String Graph Construction

    C++ 5 1

  2. PIntron

    A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

    C 4 6

  3. HapCol

    A fast and memory-efficient method for haplotype assembly from long gapless reads.

    C++ 3 2

  • A fast and memory-efficient method for haplotype assembly from long gapless reads.

    C++ 3 2 Updated Feb 21, 2017
  • A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

    C 4 6 Updated Feb 21, 2017
  • A graph aligner

    Python 1 Updated Feb 16, 2017
  • Programs to dockerize and start a new instance of pinw

    Shell 2 Updated Feb 7, 2017
  • A polynomial-time algorithm for Persistent Phylogeny

    C++ Updated Feb 3, 2017
  • Constrained Persistent Perfect Phylogeny

    C Updated Jan 30, 2017
  • Web interface for PIntron

    Ruby 1 4 Updated Jan 25, 2017
  • generate all mxn binary matrices

    C++ Updated Nov 23, 2016
  • A polynomial-time Algorithm for Persistent Phylogeny

    C++ Updated Nov 15, 2016
  • Scripts accompanying PIntron, a novel pipeline for computational gene-structure prediction based on spliced alignment of expressed sequences (ESTs and mRNAs).

    Python 1 Updated Jun 1, 2016
  • FSG, a new Fast String Graph construction algorithm for the String Graph Assembler suite

    C++ 1 62 Updated Sep 3, 2015
  • Lightweight String Graph Construction

    C++ 5 1 Updated May 19, 2015
  • BEETL

    Forked from BEETL/BEETL

    BEETL

    C++ 2 19 Updated Apr 27, 2015
  • Visualization of the gene structure

    HTML 2 Updated Mar 5, 2015
  • Tutte le informazioni sul corso di Elementi di Bioinformatica (LT Informatica)

    C 4 Updated Dec 1, 2014
  • RNA-seq Graph Builder is a method to reconstruct the Isoform Graph of a gene from RNA-seq data, without the genome information, where such a graph is a representation of the variants of alternative splicing of the gene structure.

    C++ 9 3 Updated May 17, 2013
  • A program to determine splice junctions from NGS data

    C++ 2 Updated Jan 18, 2013
  • Presentation page for the AlgoLab group

    1 1 Updated Jan 30, 2011