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@AlgoLab

BIAS Lab - Bioinformatics and Experimental Algorithms lab

Pinned

  1. shark Public

    Mapping-free software for fishing relevant reads in an RNA-Seq sample

    C++ 15 1

  2. Lightweight String Graph Construction

    C++ 10 1

  3. galig Public

    A graph aligner

    Python 17 10

  4. HapCHAT Public

    Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

    C++ 12 6

  5. gppf Public

    General Parsimony Phylogeny models from Frequencies

    Python 1

  6. PIntron Public

    A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

    C 6 6

Repositories

  • materiale-stage-tesi Public

    Una raccolta di materiale utile per tutti gli studenti che iniziano a lavorare

    Rust 0 CC0-1.0 0 0 0 Updated Jan 21, 2022
  • rs-vgaligner Public

    Rust implementation of ekg's dozyg

    Rust 6 MIT 0 0 0 Updated Jan 14, 2022
  • Jupyter Notebook 1 0 0 0 Updated Jan 11, 2022
  • complexCGR Public

    complex Chaos Game Representation for DNA sequences

    Python 2 MIT 0 0 0 Updated Nov 18, 2021
  • MALVIRUS Public

    A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)

    JavaScript 1 GPL-3.0 0 0 0 Updated Nov 16, 2021
  • MALVIRUS-data Public

    Datasets accompanying MALVIRUS

    Python 0 0 0 0 Updated Nov 16, 2021
  • MALVIRUS-repro Public

    Reproducibility of MALVIRUS experiments

    C++ 0 0 0 0 Updated Oct 8, 2021
  • kfinger Public

    A pipeline for computing overlaps between long reads based on theoretical properties of Lyndon factorizations.

    Python 0 0 0 0 Updated Aug 28, 2021
  • Rearrangement-Distances Public

    Rearrangement Distances journal paper

    TeX 0 0 0 0 Updated Jul 27, 2021
  • malva Public

    genotyping by Mapping-free ALternate-allele detection of known VAriants

    C++ 7 GPL-3.0 4 2 1 Updated Jul 4, 2021

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