A fast and memory-efficient method for haplotype assembly from long gapless reads.
A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence
A graph aligner
Programs to dockerize and start a new instance of pinw
A polynomial-time algorithm for Persistent Phylogeny
Constrained Persistent Perfect Phylogeny
Web interface for PIntron
generate all mxn binary matrices
A polynomial-time Algorithm for Persistent Phylogeny
Scripts accompanying PIntron, a novel pipeline for computational gene-structure prediction based on spliced alignment of expressed sequences (ESTs and mRNAs).
FSG, a new Fast String Graph construction algorithm for the String Graph Assembler suite
Lightweight String Graph Construction
Visualization of the gene structure
Tutte le informazioni sul corso di Elementi di Bioinformatica (LT Informatica)
RNA-seq Graph Builder is a method to reconstruct the Isoform Graph of a gene from RNA-seq data, without the genome information, where such a graph is a representation of the variants of alternative splicing of the gene structure.
A program to determine splice junctions from NGS data
Presentation page for the AlgoLab group