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@AlgoLab

BIAS Lab - Bioinformatics and Experimental Algorithms lab

Pinned

  1. shark shark Public

    Mapping-free software for fishing relevant reads in an RNA-Seq sample

    C++ 18 1

  2. LightStringGraph LightStringGraph Public

    Lightweight String Graph Construction

    C++ 10 1

  3. galig galig Public

    A graph aligner

    Python 24 12

  4. HapCHAT HapCHAT Public

    Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

    C++ 12 7

  5. gppf gppf Public

    General Parsimony Phylogeny models from Frequencies

    Python 1 1

  6. PIntron PIntron Public

    A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

    C 5 6

Repositories

Showing 10 of 66 repositories
  • RecGraph Public

    Optimal sequence-to-graph alignment with recombinations

    AlgoLab/RecGraph’s past year of commit activity
    Rust 23 MIT 1 2 1 Updated Jun 21, 2024
  • pangeblocks Public

    pangenome from maximal blocks in an MSA

    AlgoLab/pangeblocks’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 1 Updated Jun 14, 2024
  • pantas Public

    Differential quantification of alternative splicing events on spliced pangenome graphs

    AlgoLab/pantas’s past year of commit activity
    Python 5 0 0 0 Updated Apr 8, 2024
  • complexCGR Public

    complex Chaos Game Representation for DNA sequences

    AlgoLab/complexCGR’s past year of commit activity
    Python 12 MIT 0 0 0 Updated Mar 26, 2024
  • COPA24 Public Forked from DigitaleGesellschaft/jekyll-theme-conference

    PhD school on Evolution in Computational Pangenomics

    AlgoLab/COPA24’s past year of commit activity
    0 MIT 57 0 0 Updated Feb 14, 2024
  • AlgoLab/RecGraph-exps’s past year of commit activity
    Python 0 0 0 0 Updated Feb 2, 2024
  • materiale-stage-tesi Public

    Una raccolta di materiale utile per tutti gli studenti che iniziano a lavorare

    AlgoLab/materiale-stage-tesi’s past year of commit activity
    Rust 0 CC0-1.0 0 0 0 Updated Jan 31, 2024
  • rs-gax Public
    AlgoLab/rs-gax’s past year of commit activity
    Rust 0 1 0 0 Updated Dec 2, 2023
  • ESGq Public
    AlgoLab/ESGq’s past year of commit activity
    Python 2 0 0 0 Updated Jul 1, 2023
  • AlgoLab/meta_cancer’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 27, 2023

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