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Comparison of Tools for Tumor Progression Inference
General Parsimony Phylogeny models from Frequencies
Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
cancer phylogeny genetic programming
A library to manage GFA files
A graph aligner
A fast and memory-efficient method for haplotype assembly from long gapless reads.
Disk-based approach to compute the BWT and the LCP of a set of strings
Distributed Evolutionary Algorithms in Python
Multi-threaded approach to compute the BWT and the LCP of a set of strings
A polynomial-time algorithm for Persistent Phylogeny
Web interface for PIntron
Tutte le informazioni sul corso di Elementi di Bioinformatica (LT Informatica)
A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence
Analysis of the alternative splicing predictions on Plasmodium F.
Programs to dockerize and start a new instance of pinw
Constrained Persistent Perfect Phylogeny
generate all mxn binary matrices
A polynomial-time Algorithm for Persistent Phylogeny
Scripts accompanying PIntron, a novel pipeline for computational gene-structure prediction based on spliced alignment of expressed sequences (ESTs and mRNAs).
FSG, a new Fast String Graph construction algorithm for the String Graph Assembler suite
Lightweight String Graph Construction
Visualization of the gene structure
RNA-seq Graph Builder is a method to reconstruct the Isoform Graph of a gene from RNA-seq data, without the genome information, where such a graph is a representation of the variants of alternative splicing of the gene structure.
A program to determine splice junctions from NGS data
Presentation page for the AlgoLab group