Pinned repositories

  1. LightStringGraph

    Lightweight String Graph Construction

    C++ 6 1

  2. PIntron

    A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

    C 4 6

  3. HapCHAT

    Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

    C++ 5 2

  4. gppf

    General Parsimony Phylogeny models from Frequencies

    TeX 1

  5. galig

    A graph aligner

    Python 8 4

  • C++ Updated Aug 2, 2018
  • Comparison of Tools for Tumor Progression Inference

    TeX Updated Jul 31, 2018
  • Python Updated Jul 29, 2018
  • General Parsimony Phylogeny models from Frequencies

    TeX 1 MIT Updated Jul 27, 2018
  • Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

    C++ 5 2 GPL-3.0 Updated Jul 25, 2018
  • cancer phylogeny genetic programming

    Python 2 Updated Jul 17, 2018
  • A library to manage GFA files

    Python MIT Updated Jul 17, 2018
  • A graph aligner

    Python 8 4 GPL-3.0 Updated Jul 7, 2018
  • A fast and memory-efficient method for haplotype assembly from long gapless reads.

    C++ 6 4 GPL-2.0 Updated Jun 11, 2018
  • Disk-based approach to compute the BWT and the LCP of a set of strings

    Jupyter Notebook 2 MIT Updated Jun 7, 2018
  • C++ Updated May 18, 2018
  • deap

    Forked from DEAP/deap

    Distributed Evolutionary Algorithms in Python

    Python 501 LGPL-3.0 Updated May 3, 2018
  • Multi-threaded approach to compute the BWT and the LCP of a set of strings

    C++ 1 MIT Updated Apr 20, 2018
  • A polynomial-time algorithm for Persistent Phylogeny

    C++ MIT Updated Oct 8, 2017
  • Web interface for PIntron

    Ruby 1 5 Updated Jul 6, 2017
  • Tutte le informazioni sul corso di Elementi di Bioinformatica (LT Informatica)

    C 4 Updated Jun 26, 2017
  • A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

    C 4 6 Updated May 24, 2017
  • Analysis of the alternative splicing predictions on Plasmodium F.

    Ruby Apache-2.0 Updated Apr 18, 2017
  • Programs to dockerize and start a new instance of pinw

    Shell 2 Apache-2.0 Updated Feb 7, 2017
  • Constrained Persistent Perfect Phylogeny

    C 1 GPL-3.0 Updated Jan 30, 2017
  • generate all mxn binary matrices

    C++ Updated Nov 23, 2016
  • A polynomial-time Algorithm for Persistent Phylogeny

    C++ Updated Nov 15, 2016
  • Scripts accompanying PIntron, a novel pipeline for computational gene-structure prediction based on spliced alignment of expressed sequences (ESTs and mRNAs).

    Python 1 AGPL-3.0 Updated Jun 1, 2016
  • FSG, a new Fast String Graph construction algorithm for the String Graph Assembler suite

    C++ 1 73 Updated Sep 3, 2015
  • Lightweight String Graph Construction

    C++ 6 1 GPL-3.0 Updated May 19, 2015
  • BEETL

    Forked from BEETL/BEETL

    BEETL

    C++ 2 21 Updated Apr 27, 2015
  • Visualization of the gene structure

    HTML 2 Updated Mar 5, 2015
  • RNA-seq Graph Builder is a method to reconstruct the Isoform Graph of a gene from RNA-seq data, without the genome information, where such a graph is a representation of the variants of alternative splicing of the gene structure.

    C++ 7 3 AGPL-3.0 Updated May 17, 2013
  • A program to determine splice junctions from NGS data

    C++ 2 GPL-2.0 Updated Jan 18, 2013
  • Presentation page for the AlgoLab group

    1 1 Updated Jan 30, 2011