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N E X T F L O W ~ version 19.04.1
Launching main.nf [serene_kirch] - revision: 6ff5d47fa2
2 mzML files in analysis
[warm up] executor > local
executor > local (2)
[ca/9ad120] process > makeTrypSeq [ 0%] 0 of 1
[0a/35c0f1] process > makeTargetSeqLookup [ 0%] 0 of 1
executor > local (4)
[ca/9ad120] process > makeTrypSeq [ 0%] 0 of 1
[0a/35c0f1] process > makeTargetSeqLookup [ 0%] 0 of 1
[49/b3fe3e] process > makeProtSeq [ 0%] 0 of 1
[65/778c79] process > createSpectraLookup [ 0%] 0 of 1
executor > local (4)
[ca/9ad120] process > makeTrypSeq [ 0%] 0 of 1
[0a/35c0f1] process > makeTargetSeqLookup [ 0%] 0 of 1
[49/b3fe3e] process > makeProtSeq [ 0%] 0 of 1
[65/778c79] process > createSpectraLookup [ 0%] 0 of 1
ERROR ~ Error executing process > 'makeTrypSeq'
Caused by:
Process makeTrypSeq terminated with an error exit status (127)
N E X T F L O W ~ version 19.04.1
Launching
main.nf
[serene_kirch] - revision: 6ff5d47fa22 mzML files in analysis
[warm up] executor > local
executor > local (2)
[ca/9ad120] process > makeTrypSeq [ 0%] 0 of 1
[0a/35c0f1] process > makeTargetSeqLookup [ 0%] 0 of 1
executor > local (4)
[ca/9ad120] process > makeTrypSeq [ 0%] 0 of 1
[0a/35c0f1] process > makeTargetSeqLookup [ 0%] 0 of 1
[49/b3fe3e] process > makeProtSeq [ 0%] 0 of 1
[65/778c79] process > createSpectraLookup [ 0%] 0 of 1
executor > local (4)
[ca/9ad120] process > makeTrypSeq [ 0%] 0 of 1
[0a/35c0f1] process > makeTargetSeqLookup [ 0%] 0 of 1
[49/b3fe3e] process > makeProtSeq [ 0%] 0 of 1
[65/778c79] process > createSpectraLookup [ 0%] 0 of 1
ERROR ~ Error executing process > 'makeTrypSeq'
Caused by:
Process
makeTrypSeq
terminated with an error exit status (127)Command executed:
msslookup seqspace -i Homo_sapiens.GRCh38.pep.all.fa --insourcefrag --minlen 8
Command exit status:
127
Command output:
(empty)
Command error:
.command.sh: line 2: msslookup: command not found
Work dir:
/scratch/oknjav001/transcriptomics/proteogenomics/yafengpipeline/workflow/work/ca/9ad120ca3834cfe3829f7bae5ab9af
Tip: when you have fixed the problem you can continue the execution appending to the nextflow command line the option
-resume
-- Check '.nextflow.log' file for details
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