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add size information to fasta file for sumaclust or remove -s size from sumaclust command #37

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lentendu opened this issue Sep 25, 2018 · 2 comments

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@lentendu
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In GitLab by @ahb-ufz on Sep 18, 2018, 12:02

workflow runs into error in OTU step with sumaclust, because *unique.sort.fasta has no size argument in the header, which is required by the command. The size could be added to the fasta file or the "-s size" could be removed from l. 118 of the OTU script.
(second option would mean sorting by count, which is reasonable; the workflow runs to the end with default setting)
@lentendu , you decide.

@lentendu lentendu added this to the Public release milestone Sep 25, 2018
@lentendu lentendu self-assigned this Sep 25, 2018
@lentendu
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In GitLab by @lentendu on Sep 19, 2018, 14:38

closed via commit d479665

@lentendu
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In GitLab by @lentendu on Sep 19, 2018, 14:52

mentioned in commit c8c56ef

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