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Group spearman bootstraps for small matrices #2

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lentendu opened this issue Jun 5, 2018 · 0 comments
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Group spearman bootstraps for small matrices #2

lentendu opened this issue Jun 5, 2018 · 0 comments
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lentendu commented Jun 5, 2018 •
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Compute observed and null matrices Spearman's rho for multiple seeds in each array job to reduce time associated with job queueing (initialisation, completion).
For example, compute 10 seeds per array for matrices with less than 1000 OTUs.
The runtime should almost reach (but not overpass) the maximum time limit for the short queue.
@lentendu lentendu self-assigned this Jun 5, 2018
lentendu pushed a commit that referenced this issue Jun 19, 2018
Implements #2 with a minimum of 16 arrays and a maximum cumulative ru…
b0bc548 
…ntime of 1h per array to group bootstraps.
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