How to find which slice has the nodule detected

[bijoygit]

Hi . Thanks for the wonderful explanation. Can you please give me some info on how to find whcih slice has the nodule detected.

[bijoygit]

Can you please help me in this . This is just one thing I couldn’t understand

[lfz]

look at the demo file 2018-01-09 19:48 GMT+08:00 Bijoy Kumar Khandelwal <notifications@github.com> :

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Can you please help me in this . This is just one thing I couldn’t understand — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#60 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIigQ22AGI9B6isWzixj7Z16yFtV4xLaks5tI1IlgaJpZM4RXq5t> .

-- 廖方舟 清华大学医学院 Liao Fangzhou School of Medicine Tsinghua University Beijing 100084 China

[bijoygit]

Sorry . But the demo file doesn’t help me to get the particular slice which has nodule . Can u just let me know how to get a particular slice with nodule

[lfz]

In [41]: box Out[41]: array([169, 153, 69, 13]) 169 is the slice number In [42]: ax = plt.subplot(1,1,1)plt.imshow(img[0,box[0]],'gray') 2018-01-12 12:27 GMT+08:00 Bijoy Kumar Khandelwal <notifications@github.com> :

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Sorry . But the demo file doesn’t help me to get the particular slice which has nodule . Can u just let me know how to get a particular slice with nodule — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#60 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIigQ1CCurQlOnokf4kNILWa3OqKVwbCks5tJt8dgaJpZM4RXq5t> .

-- 廖方舟 清华大学医学院 Liao Fangzhou School of Medicine Tsinghua University Beijing 100084 China

[lfz]

196 means the slice number in the numpy file, the resolution of the numpy file is different from the origin dicom file 2018-01-12 13:12 GMT+08:00 Bijoy Kumar Khandelwal <notifications@github.com> :

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Thanks. Actually I have a patient data with 140 dicom files. But the box shows ('BOX', array([196, 50, 145, 12])) How is that possible ? — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#60 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIigQzRXsGjObhvcS9iKYo-MNXWFevB6ks5tJumngaJpZM4RXq5t> .

-- 廖方舟 清华大学医学院 Liao Fangzhou School of Medicine Tsinghua University Beijing 100084 China

[lfz]

store the crop and resize parameters during preprocessing, and revert the coordinate found in the resized version back to the original one 2018-01-12 13:38 GMT+08:00 Bijoy Kumar Khandelwal <notifications@github.com> :

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Is there anyway I can map it back to the original slice number ? — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#60 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIigQ30uLuFL3PFSvMmtf1Rv-o5mzJrgks5tJu_JgaJpZM4RXq5t> .

-- 廖方舟 清华大学医学院 Liao Fangzhou School of Medicine Tsinghua University Beijing 100084 China