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exomiser error: connect failed connection refused #244

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gevro opened this issue Jul 10, 2024 · 2 comments
Closed

exomiser error: connect failed connection refused #244

gevro opened this issue Jul 10, 2024 · 2 comments
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HPO Exomiser / PhenoGenius

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@gevro
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gevro commented Jul 10, 2024

Hi,
I'm getting a bunch of the below errors:

http://localhost:10000/exomiser/api/prioritise/?phenotypes=HP:0005280,HP:0000494,HP:0011800,HP:0000601,HP:0000252,HP:0000278,HP:0000237,HP:0001711,HP:0000587,HP:0000041,H
P:0012286,HP:0030047,HP:0002418,HP:0001317,HP:0011441,HP:0007361,HP:0001274,HP:0002410,HP:0001320,HP:0002190,HP:0010664,HP:0001360,HP:0002365,HP:0006870,HP:0000252,HP:000
2126,HP:0001511&prioritiser=hiphive&prioritiser-params=human,mouse,fish,ppi&genes=440590
geneName: ZYG11B
connect failed connection refused

http://localhost:10000/exomiser/api/prioritise/?phenotypes=HP:0005280,HP:0000494,HP:0011800,HP:0000601,HP:0000252,HP:0000278,HP:0000237,HP:0001711,HP:0000587,HP:0000041,H
P:0012286,HP:0030047,HP:0002418,HP:0001317,HP:0011441,HP:0007361,HP:0001274,HP:0002410,HP:0001320,HP:0002190,HP:0010664,HP:0001360,HP:0002365,HP:0006870,HP:0000252,HP:000
2126,HP:0001511&prioritiser=hiphive&prioritiser-params=human,mouse,fish,ppi&genes=79699
geneName: ZZEF1
connect failed connection refused

http://localhost:10000/exomiser/api/prioritise/?phenotypes=HP:0005280,HP:0000494,HP:0011800,HP:0000601,HP:0000252,HP:0000278,HP:0000237,HP:0001711,HP:0000587,HP:0000041,H
P:0012286,HP:0030047,HP:0002418,HP:0001317,HP:0011441,HP:0007361,HP:0001274,HP:0002410,HP:0001320,HP:0002190,HP:0010664,HP:0001360,HP:0002365,HP:0006870,HP:0000252,HP:000
2126,HP:0001511&prioritiser=hiphive&prioritiser-params=human,mouse,fish,ppi&genes=23140
geneName: ZZZ3
connect failed connection refused

http://localhost:10000/exomiser/api/prioritise/?phenotypes=HP:0005280,HP:0000494,HP:0011800,HP:0000601,HP:0000252,HP:0000278,HP:0000237,HP:0001711,HP:0000587,HP:0000041,H
P:0012286,HP:0030047,HP:0002418,HP:0001317,HP:0011441,HP:0007361,HP:0001274,HP:0002410,HP:0001320,HP:0002190,HP:0010664,HP:0001360,HP:0002365,HP:0006870,HP:0000252,HP:000
2126,HP:0001511&prioritiser=hiphive&prioritiser-params=human,mouse,fish,ppi&genes=26009
End the REST service:
kill: sending signal to 3492299 failed: No such process
WARNING: Reading Annotation file tmp.aLOouELhne and DISP1 is seen multiple times.
WARNING: Reading Annotation file tmp.aLOouELhne and DLL1 is seen multiple times.

Thanks

@gevro
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gevro commented Jul 11, 2024

THis happened when I was running annotSV simultaneously for two samples. When I ran them separately I did not get the error.

@lgmgeo lgmgeo added the HPO Exomiser / PhenoGenius label Jul 11, 2024
@lgmgeo
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lgmgeo commented Jul 11, 2024

Ok, got it.
This bug has already been reported: #72

Sorry, I don't have enough time to work on submitting multiple jobs.
My next development will be to add a T2T module. And not in the near future.

@gevro gevro closed this as completed Jul 11, 2024
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