Which petsc version officially supported by the new version of libmesh (libmesh-1.3.0) ? #1775
Comments
|
Let's see... v1.3.0 was tagged April 9, 2018. The released version of PETSc at that time was technically 3.9, but only by a couple days. So I'd say it should support PETSc 3.8 but might also work with 3.9. |
|
As I have tried PETSc3.7.7 is working. 3.8 and 3.9 could not support one of the examples! |
Well don't leave us in suspense... which example was not working and what was the error message? |
|
Dear John W. Peterson,
While I was installing libmesh-1.3.0 (make check step), with petsc-3.9.2
version, one of the test failed. You can find the failed error details via
attachment.
Thanks for your attention,
Niloufar Abtahi
On Sun, Jul 8, 2018 at 10:19 PM, John W. Peterson ***@***.***> wrote:
3.8 and 3.9 could not support one of the examples!
Well don't leave us in suspense... which example was not working and what
was the error message?
—
You are receiving this because you authored the thread.
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Making check in include
make[1]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/include'
Making check in libmesh
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/include/libmesh'
make check-am
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/include/libmesh'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/include/libmesh'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/include/libmesh'
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/include'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/include'
make[1]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/include'
Making check in contrib
make[1]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib'
Making check in eigen/eigen
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/eigen/3.2.9'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/eigen/3.2.9'
Making check in gmv
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/gmv'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/gmv'
Making check in gzstream
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/gzstream'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/gzstream'
Making check in netcdf/v4
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1'
Making check in include
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/include'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/include'
Making check in oc2
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/oc2'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/oc2'
Making check in libdispatch
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/libdispatch'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/libdispatch'
Making check in libsrc
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/libsrc'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/libsrc'
Making check in libdap2
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/libdap2'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/libdap2'
Making check in liblib
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/liblib'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/liblib'
Making check in ncgen3
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen3'
make check-TESTS
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen3'
*** Testing ncgen3.
*** creating classic file c0.nc from c0.cdl...
*** creating 64-bit offset file c0_64.nc from c0.cdl...
*** Test successful!
PASS: run_tests.sh
=============
1 test passed
=============
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen3'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen3'
Making check in ncgen
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen'
make check-TESTS
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen'
*** Testing ncgen.
*** creating classic file c0.nc from c0.cdl...
*** generating c0.nc ***
*** comparing c0.nc against ./c0.cdl ***
*** creating 64-bit offset file c0_64.nc from c0.cdl...
*** generating c0.nc ***
*** comparing c0.nc against ./c0.cdl ***
*** creating 64-bit offset file c5.nc from c5.cdl...
*** Test successful!
PASS: run_tests.sh
=============
1 test passed
=============
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncgen'
Making check in ncdump
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make check-recursive
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
Making check in cdl
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/cdl'
make[5]: Nothing to be done for 'check'.
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/cdl'
Making check in expected
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/expected'
make[5]: Nothing to be done for 'check'.
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/expected'
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make
make[6]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make all-recursive
make[7]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
Making all in cdl
make[8]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/cdl'
make[8]: Nothing to be done for 'all'.
make[8]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/cdl'
Making all in expected
make[8]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/expected'
make[8]: Nothing to be done for 'all'.
make[8]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump/expected'
make[8]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make[8]: Nothing to be done for 'all-am'.
make[8]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make[7]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make[6]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make check-TESTS
make[6]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
==================
All 0 tests passed
==================
make[6]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/ncdump'
Making check in docs
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/docs'
Making check in images
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/docs/images'
make[4]: Nothing to be done for 'check'.
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/docs/images'
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/docs'
make[4]: Nothing to be done for 'check-am'.
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/docs'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/docs'
Making check in examples
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples'
Making check in C
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/C'
make simple_xy_wr simple_xy_rd sfc_pres_temp_wr sfc_pres_temp_rd pres_temp_4D_wr pres_temp_4D_rd
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/C'
make[5]: 'simple_xy_wr' is up to date.
make[5]: 'simple_xy_rd' is up to date.
make[5]: 'sfc_pres_temp_wr' is up to date.
make[5]: 'sfc_pres_temp_rd' is up to date.
make[5]: 'pres_temp_4D_wr' is up to date.
make[5]: 'pres_temp_4D_rd' is up to date.
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/C'
make check-TESTS
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/C'
*** SUCCESS writing example file simple_xy.nc!
PASS: simple_xy_wr
*** SUCCESS reading example file simple_xy.nc!
PASS: simple_xy_rd
*** SUCCESS writing example file sfc_pres_temp.nc!
PASS: sfc_pres_temp_wr
*** SUCCESS reading example file sfc_pres_temp.nc!
PASS: sfc_pres_temp_rd
*** SUCCESS writing example file pres_temp_4D.nc!
PASS: pres_temp_4D_wr
*** SUCCESS reading example file pres_temp_4D.nc!
PASS: pres_temp_4D_rd
==================
All 6 tests passed
==================
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/C'
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/C'
Making check in CDL
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/CDL'
make check-TESTS
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/CDL'
*** Creating example data files from CDL scripts.
*** creating simple_xy.nc...
*** checking sfc_pres_temp.nc...
*** checking pres_temp_4D.nc...
*** All example creations worked!
PASS: create_sample_files.sh
*** Testing that the CDL examples produced same files as C examples.
*** checking simple_xy.nc...
*** checking sfc_pres_temp.nc...
*** checking pres_temp_4D.nc...
*** All CDL example comparisons worked!
PASS: do_comps.sh
==================
All 2 tests passed
==================
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/CDL'
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples/CDL'
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples'
make[4]: Nothing to be done for 'check-am'.
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1/examples'
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/netcdf/4.4.1.1'
Making check in exodusii/v5.22/exodus
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/exodusii/5.22b/exodus'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/exodusii/5.22b/exodus'
Making check in nemesis/v5.22/nemesis
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/exodusii/5.22b/nemesis'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/exodusii/5.22b/nemesis'
Making check in tecplot/tecio
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/tecplot/tecio'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/tecplot/tecio'
Making check in qhull/qhull
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/qhull/2012.1'
make libqhull.a libqhull_p.a libqhullcpp.a rbox qconvex qdelaunay qhalf qvoronoi qhull testqset user_eg user_eg2 user_eg3
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/qhull/2012.1'
make[3]: 'libqhull.a' is up to date.
make[3]: 'libqhull_p.a' is up to date.
make[3]: 'libqhullcpp.a' is up to date.
make[3]: 'rbox' is up to date.
make[3]: 'qconvex' is up to date.
make[3]: 'qdelaunay' is up to date.
make[3]: 'qhalf' is up to date.
make[3]: 'qvoronoi' is up to date.
make[3]: 'qhull' is up to date.
make[3]: 'testqset' is up to date.
make[3]: 'user_eg' is up to date.
make[3]: 'user_eg2' is up to date.
make[3]: 'user_eg3' is up to date.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/qhull/2012.1'
make check-local
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/qhull/2012.1'
==============================
== Test qset.c with mem.c ====
==============================
./testqset 10000
qh_meminitbuffers: memory initialized with alignment 8
SETelemsize is 8 bytes for pointer-to-int
Testing qh_setappend 0..9999. Test i0 i1 i2 i3 i4 i5 i6 i7 i8 i9 i10 i100 i1000 i9999
Testing qh_settruncate 5000 and 0. Test n0
Testing qh_setappend2ndlast 0,0..9999. Test 0 i0 i1 i2 i3 i4 i5 i6 i7 i8 i9 i10 i100 i1000 i9999
Testing SETtruncate_ 5000 and 0. Test n0
Testing qh_setdelnthsorted and qh_setaddnth 1..9999. Test j1 j2 j3 j4 j5 j6 j7 j8 j9 j10 j100 j1000 j9999
Testing qh_setappend_set 0..9999. Test j0 j1 j2 j3 j4 j5 j6 j7 j8 j9 j10 j100 j1000 j9999
Testing qh_setcompact and qh_setcopy 0..9999. Test j0 j1 j2 j3 j4 j5 j6 j7 j8 j9 j10 j100 j1000 j9999
Testing qh_setequal*, qh_setin*, qh_setdel, qh_setdelnth, and qh_setlarger 0..9999. Test j0 j1 j2 j3 j4 j5 j6 j7 j8 j9 j10 j100 j1000 j9999
Testing qh_settemp* 0..9999. Test j0 j1 j2 j3 j4 j5 j6 j7 j8 j9 j10 j100 j1000 j9999
Testing qh_setlast, qh_setnew_delnthsorted, qh_setunique, and qh_setzero 0..9999. Test j0 j1 j2 j3 j4 j5 j6 j7 j8 j9 j10 j100 j1000 j9999
Testing qh_setdel*, qh_setaddsorted, and 0..9999. Test j0 j1 j2 j3 j4 j5 j6 j7 j8 j9 j10 j100 j1000 j9999
Not testing qh_setduplicate and qh_setfree2.
These routines use heap-allocated set contents. See qhull tests.
memory statistics:
53 quick allocations
9 short allocations
8334 long allocations
61 short frees
8334 long frees
40 bytes of short memory in use
272 bytes of short memory in freelists
130752 bytes of dropped short memory
0 bytes of unused short memory (estimated)
211096 bytes of long memory allocated (max, except for input)
0 bytes of long memory in use (in 0 pieces)
131064 bytes of short memory buffers (minus links)
65536 bytes per short memory buffer (initially 131072 bytes)
1148 calls to qh_setlarger
5.5e+02 average copy size
freelists(bytes->count): 16->0 24->2 32->2 40->4
testqset: OK
==============================
== Run the qhull smoketest ===
==============================
./rbox D4 | ./qhull Tv
Output completed. Verifying that all points are below 2.8e-15 of
all facets. Will make 13000 distance computations.
Convex hull of 50 points in 4-d:
Number of vertices: 50
Number of facets: 260
Statistics for: rbox D4 | qhull Tv
Number of points processed: 50
Number of hyperplanes created: 712
Number of distance tests for qhull: 1433
CPU seconds to compute hull (after input): 0.000796
==============================
========= qconvex ============
==============================
./rbox 10 | ./qconvex Tv
Output completed. Verifying that all points are below 2e-15 of
all facets. Will make 160 distance computations.
Convex hull of 10 points in 3-d:
Number of vertices: 10
Number of facets: 16
Statistics for: rbox 10 | qconvex Tv
Number of points processed: 10
Number of hyperplanes created: 27
Number of distance tests for qhull: 44
CPU seconds to compute hull (after input): 0.000119
==============================
========= qdelaunay ==========
==============================
./rbox 10 | ./qdelaunay Tv
Output completed. Verifying that all points are below 5.6e-15 of
all facets. Will make 150 distance computations.
Delaunay triangulation by the convex hull of 10 points in 4-d:
Number of input sites: 10
Number of Delaunay regions: 15
Statistics for: rbox 10 | qdelaunay Tv
Number of points processed: 10
Number of hyperplanes created: 48
Number of facets in hull: 25
Number of distance tests for qhull: 69
CPU seconds to compute hull (after input): 0.000211
==============================
========= qhalf ==============
==============================
./rbox 10 | ./qconvex FQ FV n Tv | ./qhalf Tv
Output completed. Verifying that all points are below 2e-15 of
all facets. Will make 160 distance computations.
Output completed. Verifying that all points are below outer planes of
all facets. Will make 160 distance computations.
Halfspace intersection by the convex hull of 16 points in 3-d:
Number of halfspaces: 16
Number of non-redundant halfspaces: 16
Number of intersection points: 10
Number of non-simplicial intersection points: 10
Statistics for: rbox 10 | qconvex FQ FV n Tv | qhalf Tv
Number of points processed: 16
Number of hyperplanes created: 29
Number of distance tests for qhull: 100
Number of distance tests for merging: 342
Number of distance tests for checking: 156
Number of merged facets: 18
CPU seconds to compute hull (after input): 0.000331
==============================
========= qvoronoi ===========
==============================
./rbox 10 | ./qvoronoi Tv
Output completed. Verifying that all points are below 5.6e-15 of
all facets. Will make 150 distance computations.
Voronoi diagram by the convex hull of 10 points in 4-d:
Number of Voronoi regions: 10
Number of Voronoi vertices: 15
Statistics for: rbox 10 | qvoronoi Tv
Number of points processed: 10
Number of hyperplanes created: 48
Number of facets in hull: 25
Number of distance tests for qhull: 69
CPU seconds to compute hull (after input): 0.000253
==============================
========= user_eg ============
==============================
./user_eg
Convex hull of 8 points in 3-d:
Number of vertices: 8
Number of facets: 6
Number of non-simplicial facets: 6
Statistics for: | qhull s Tcv
Number of points processed: 8
Number of hyperplanes created: 11
Number of distance tests for qhull: 35
Number of distance tests for merging: 142
Number of distance tests for checking: 56
Number of merged facets: 6
CPU seconds to compute hull (after input): 0.000268
Output completed. Verifying that all points are below outer planes of
all facets. Will make 48 distance computations.
Delaunay triangulation by the convex hull of 8 points in 4-d:
Number of input sites: 8
Number of Delaunay regions: 10
Statistics for: | qhull s d Tcv
Number of points processed: 8
Number of hyperplanes created: 28
Number of facets in hull: 19
Number of distance tests for qhull: 32
CPU seconds to compute hull (after input): 0.000135
Output completed. Verifying that all points are below 1.4e-14 of
all facets. Will make 80 distance computations.
Delaunay triangulation by the convex hull of 8 points in 4-d:
Number of input sites: 8
Number of Delaunay regions: 8
Statistics for: | qhull s d Tcv
Number of points processed: 8
Number of hyperplanes created: 28
Number of facets in hull: 17
Number of distance tests for qhull: 29
CPU seconds to compute hull (after input): 0.000123
Output completed. Verifying that all points are below 1.1e-14 of
all facets. Will make 64 distance computations.
Halfspace intersection by the convex hull of 8 points in 3-d:
Number of halfspaces: 8
Number of non-redundant halfspaces: 8
Number of intersection points: 6
Number of non-simplicial intersection points: 6
Statistics for: | qhull H0 s Tcv Fp
Number of points processed: 8
Number of hyperplanes created: 11
Number of distance tests for qhull: 35
Number of distance tests for merging: 142
Number of distance tests for checking: 56
Number of merged facets: 6
CPU seconds to compute hull (after input): 0.000182
Output completed. Verifying that all points are below outer planes of
all facets. Will make 48 distance computations.
This is the output from user_eg.c
It shows how qhull() may be called from an application using the qhull
shared library. It is not part of qhull itself. If it appears accidently,
please remove user_eg.c from your project.
compute convex hull of cube after rotating input
input
-1 -1 -1
1 -1 -1
-1 1 -1
1 1 -1
-1 -1 1
1 -1 1
-1 1 1
1 1 1
8 vertices and 6 facets with normals:
-0 -0 -1
0 -1 0
1 -0 -0
-1 -0 -0
0 1 -0
-0 -0 1
compute 3-d Delaunay triangulation
seed: 1530431531
input
0.445 -0.0154 -0.843
0.186 0.639 0.517
-0.963 0.957 -0.225
0.499 0.189 0.0609
0.717 -0.911 0.942
0.714 -0.194 0.818
-0.212 0.802 -0.879
0.254 -0.499 -0.751
8 vertices and 19 facets with normals:
-0.21 -0.43 -0.58 0.66
-0.66 0.035 -0.32 -0.68
-0.45 0.52 -0.18 -0.7
-0.72 -0.49 0.35 -0.34
-0.74 -0.44 0.31 -0.41
-0.69 -0.5 0.36 -0.37
0.25 -0.27 -0.66 0.65
-0.44 0.12 -0.5 -0.73
0.81 0.57 -0.11 0.1
-0.64 -0.5 0.42 -0.4
0.82 0.56 -0.095 0.12
0.88 -0.37 -0.13 -0.25
0.89 -0.36 -0.14 -0.24
0.89 -0.36 -0.14 -0.24
0.83 0.44 -0.15 0.32
0.81 0.56 -0.096 0.13
0.55 0.68 0.17 0.46
0.52 0.69 0.22 0.46
0.55 0.68 0.17 0.45
find 3-d Delaunay triangle closest to [0.5, 0.5, ...]
0.71 -0.19 0.82
0.19 0.64 0.52
0.50 0.19 0.06
0.72 -0.91 0.94
save first triangulation and compute a new triangulation
seed: 1530431532
input
0.445 0.248 0.669
-0.897 -0.296 0.955
-0.869 0.315 -0.867
0.368 0.956 -0.9
0.379 -0.842 -0.951
-0.227 -0.852 0.833
0.555 0.936 -0.0441
-0.373 0.679 -0.89
8 vertices and 17 facets with normals:
0.52 0.11 0.45 0.71
0.43 -0.054 0.28 0.86
0.7 -0.041 0.34 0.63
-0.18 -0.053 -0.13 0.97
-0.66 -0.71 -0.24 -0.067
0.4 0.059 -0.62 -0.68
-0.048 0.026 -1 0.04
-0.43 0.83 0.27 0.2
-0.47 0.81 0.24 0.27
-0.31 -0.42 -0.24 -0.82
-0.18 -0.28 -0.37 -0.87
0.8 -0.1 0.35 0.48
0.3 -0.024 -0.52 -0.8
-0.57 -0.21 0.0085 -0.8
-0.61 0.53 0.23 -0.54
0.53 0.16 0.62 0.56
-0.54 0.67 0.29 -0.41
save second triangulation and restore first one
8 vertices and 19 facets with normals:
-0.21 -0.43 -0.58 0.66
-0.66 0.035 -0.32 -0.68
-0.45 0.52 -0.18 -0.7
-0.72 -0.49 0.35 -0.34
-0.74 -0.44 0.31 -0.41
-0.69 -0.5 0.36 -0.37
0.25 -0.27 -0.66 0.65
-0.44 0.12 -0.5 -0.73
0.81 0.57 -0.11 0.1
-0.64 -0.5 0.42 -0.4
0.82 0.56 -0.095 0.12
0.88 -0.37 -0.13 -0.25
0.89 -0.36 -0.14 -0.24
0.89 -0.36 -0.14 -0.24
0.83 0.44 -0.15 0.32
0.81 0.56 -0.096 0.13
0.55 0.68 0.17 0.46
0.52 0.69 0.22 0.46
0.55 0.68 0.17 0.45
free first triangulation and restore second one.
8 vertices and 17 facets with normals:
0.52 0.11 0.45 0.71
0.43 -0.054 0.28 0.86
0.7 -0.041 0.34 0.63
-0.18 -0.053 -0.13 0.97
-0.66 -0.71 -0.24 -0.067
0.4 0.059 -0.62 -0.68
-0.048 0.026 -1 0.04
-0.43 0.83 0.27 0.2
-0.47 0.81 0.24 0.27
-0.31 -0.42 -0.24 -0.82
-0.18 -0.28 -0.37 -0.87
0.8 -0.1 0.35 0.48
0.3 -0.024 -0.52 -0.8
-0.57 -0.21 0.0085 -0.8
-0.61 0.53 0.23 -0.54
0.53 0.16 0.62 0.56
-0.54 0.67 0.29 -0.41
compute halfspace intersection about the origin for a diamond
input as halfspace coefficients + offsets
-1 -1 -1 -1
1 -1 -1 -1
-1 1 -1 -1
1 1 -1 -1
-1 -1 1 -1
1 -1 1 -1
-1 1 1 -1
1 1 1 -1
3
6
0 0 -1
0 -1 0
1 0 0
-1 0 0
0 1 0
0 0 1
8 vertices and 6 facets with normals:
-0 -0 -1
0 -1 0
1 -0 -0
-1 -0 -0
0 1 -0
-0 -0 1
==============================
========= user_eg2 ===========
==============================
./user_eg2
Output completed. Verifying that all points are below outer planes of
all facets. Will make 96 distance computations.
Convex hull of 14 points in 3-d:
Number of vertices: 14
Number of facets: 12
Number of non-simplicial facets: 12
Statistics for: user_eg cube | qhull s Tcv Q11
Number of points processed: 14
Number of hyperplanes created: 23
Number of distance tests for qhull: 65
Number of distance tests for merging: 450
Number of distance tests for checking: 190
Number of merged facets: 18
CPU seconds to compute hull (after input): 0.000133
Output completed. Verifying that all points are below outer planes of
all facets. Will make 168 distance computations.
Delaunay triangulation by the convex hull of 8 points in 3-d:
Number of input sites: 8
Number of Delaunay regions: 10
Statistics for: user_eg Delaunay | qhull s d Tcv
Number of points processed: 8
Number of hyperplanes created: 19
Number of facets in hull: 12
Number of distance tests for qhull: 29
CPU seconds to compute hull (after input): 5.3e-05
Output completed. Verifying that all points are below 7.7e-15 of
all facets. Will make 80 distance computations.
Delaunay triangulation by the convex hull of 14 points in 3-d:
Number of input sites: 14
Number of Delaunay regions: 21
Statistics for: user_eg Delaunay | qhull s d Tcv
Number of points processed: 14
Number of hyperplanes created: 48
Number of facets in hull: 24
Number of distance tests for qhull: 68
CPU seconds to compute hull (after input): 5.3e-05
Output completed. Verifying that all points are below 7.7e-15 of
all facets. Will make 294 distance computations.
Halfspace intersection by the convex hull of 8 points in 3-d:
Number of halfspaces: 8
Number of non-redundant halfspaces: 8
Number of intersection points: 6
Number of non-simplicial intersection points: 6
Statistics for: user_eg halfspaces | qhull H0 s Tcv
Number of points processed: 8
Number of hyperplanes created: 11
Number of distance tests for qhull: 35
Number of distance tests for merging: 142
Number of distance tests for checking: 56
Number of merged facets: 6
CPU seconds to compute hull (after input): 9e-05
Output completed. Verifying that all points are below outer planes of
all facets. Will make 48 distance computations.
Halfspace intersection by the convex hull of 14 points in 3-d:
Number of halfspaces: 14
Number of non-redundant halfspaces: 14
Number of intersection points: 24
Statistics for: user_eg halfspaces | qhull H0 s Tcv
Number of points processed: 14
Number of hyperplanes created: 35
Number of distance tests for qhull: 59
Number of distance tests for merging: 306
Number of distance tests for checking: 214
Number of merged facets: 6
CPU seconds to compute hull (after input): 9e-05
Output completed. Verifying that all points are below outer planes of
all facets. Will make 192 distance computations.
This is the output from user_eg2.c
It shows how qhull() may be called from an application in the same way as
qconvex. It is not part of qhull itself. If it appears accidently,
please remove user_eg2.c from your project.
compute triangulated convex hull of cube after rotating input
8 vertices and 12 facets with normals:
-0 -0 -1
-0 -0 -1
0 -1 0
0 -1 0
1 -0 -0
1 -0 -0
-1 -0 -0
-1 -0 -0
0 1 -0
0 1 -0
-0 -0 1
-0 -0 1
add points in a diamond
9 vertices and 14 facets
10 vertices and 16 facets
11 vertices and 16 facets
12 vertices and 16 facets
13 vertices and 14 facets
14 vertices and 12 facets
14 vertices and 12 facets with normals:
0.71 -0.71 -0
-0.71 -0.71 0
-0.71 0.71 -0
0.71 0.71 -0
-0.71 -0 -0.71
-0 0.71 -0.71
0 -0.71 -0.71
0.71 0 -0.71
-0 -0.71 0.71
-0.71 0 0.71
0.71 0 0.71
-0 0.71 0.71
compute 2-d Delaunay triangulation
seed: 1530431531
8 vertices and 12 facets with normals:
0.22 -0.062 0.97
-0.63 -0.67 0.4
-0.4 -0.81 -0.44
0.063 0.96 -0.26
-0.65 0.59 -0.48
-0.57 -0.048 -0.82
0.94 -0.12 -0.32
0.17 -0.76 -0.63
0.11 0.95 -0.31
0.28 0.67 -0.68
0.92 0.015 -0.39
0.57 0.43 -0.71
add points to triangulation
added point p8: -1 -0.7369 1.543
9 points, 0 extra points, 9 vertices, and 14 facets in total
added point p9: 0.5112 -0.0827 0.2682
10 points, 0 extra points, 10 vertices, and 16 facets in total
added point p10: 0.06553 -0.5621 0.3202
11 points, 0 extra points, 11 vertices, and 18 facets in total
added point p11: -0.9059 0.3577 0.9486
12 points, 0 extra points, 12 vertices, and 20 facets in total
added point p12: 0.3586 0.8694 0.8844
13 points, 0 extra points, 13 vertices, and 22 facets in total
added point p13: -0.233 0.03883 0.0558
14 points, 0 extra points, 14 vertices, and 24 facets in total
find Delaunay triangle closest to [0.5, 0.5, ...]
0.36 0.87
0.64 0.52
0.19 0.06
compute halfspace intersection about the origin for a diamond
add halfspaces for cube to intersection
added offset -1 and normal 1.732 0 0
8 points, 1 extra points, 9 vertices, and 9 facets in total
added offset -1 and normal -1.732 0 0
8 points, 2 extra points, 10 vertices, and 12 facets in total
added offset -1 and normal 0 1.732 0
8 points, 3 extra points, 11 vertices, and 15 facets in total
added offset -1 and normal 0 -1.732 0
8 points, 4 extra points, 12 vertices, and 18 facets in total
added offset -1 and normal 0 0 1.732
8 points, 5 extra points, 13 vertices, and 21 facets in total
added offset -1 and normal 0 0 -1.732
8 points, 6 extra points, 14 vertices, and 24 facets in total
==============================
========= user_eg3 ===========
==============================
./user_eg3 rbox "10 D2" "2 D2" qhull "s p" facets
rbox 10 D2
rbox 2 D2
Results of s p
Convex hull of 12 points in 2-d:
Number of vertices: 5
Number of facets: 5
Statistics for: rbox "10 D2" "2 D2" | qhull s p
Number of points processed: 5
Number of hyperplanes created: 8
Number of distance tests for qhull: 64
CPU seconds to compute hull (after input): 4.7e-05
2
5
-0.02222276248244826 -0.4979727817680433
-0.4285431913366012 0.4745826469497594
0.3790312361708201 0.3779794437605696
0.3443122672329771 -0.1437312230875075
-0.3674659290047977 0.0001301793382784133
Facets created by Qhull::runQhull()
- f1
- flags: top simplicial
- normal: 0.118775 0.992921
- offset: -0.420323
- vertices: p4(v1) p1(v0)
- neighboring facets: f6 f4
- f4
- flags: top simplicial
- normal: 0.997793 -0.0664014
- offset: -0.353096
- vertices: p8(v4) p4(v1)
- neighboring facets: f1 f5
- f5
- flags: bottom simplicial
- normal: 0.694945 -0.719063
- offset: -0.34263
- vertices: p8(v4) p0(v2)
- neighboring facets: f7 f4
- f6
- flags: bottom simplicial
- normal: -0.991816 -0.127679
- offset: -0.364442
- vertices: p10(v5) p1(v0)
- neighboring facets: f1 f7
- f7
- flags: top simplicial
- normal: -0.821881 -0.569659
- offset: -0.301939
- vertices: p10(v5) p0(v2)
- neighboring facets: f5 f6
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/qhull/2012.1'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/qhull/2012.1'
Making check in libHilbert
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/libHilbert'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/libHilbert'
Making check in metis
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metis'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metis'
Making check in parmetis
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/parmetis'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/parmetis'
Making check in fparser
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser'
make check-recursive
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser'
Making check in extrasrc
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser/extrasrc'
make check-am
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser/extrasrc'
make[5]: Nothing to be done for 'check-am'.
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser/extrasrc'
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser/extrasrc'
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser'
make[4]: Nothing to be done for 'check-am'.
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/fparser'
Making check in nanoflann
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/nanoflann'
make pointcloud_kdd_radius pointcloud_example pointcloud_adaptor_example vector_of_vectors_example matrix_example
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/nanoflann'
make[3]: 'pointcloud_kdd_radius' is up to date.
make[3]: 'pointcloud_example' is up to date.
make[3]: 'pointcloud_adaptor_example' is up to date.
make[3]: 'vector_of_vectors_example' is up to date.
make[3]: 'matrix_example' is up to date.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/nanoflann'
make check-TESTS
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/nanoflann'
knnSearch(): num_results=4
idx[0]=2 dist[0]=39.9873
idx[1]=3 dist[1]=89.0222
idx[2]=0 dist[2]=105.085
idx[3]=1 dist[3]=126.031
radiusSearch(): radius=0.1 -> 0 matches
knnSearch(): num_results=5
idx[0]=56340 dist[0]=0.0289
idx[1]=22009 dist[1]=0.0398
idx[2]=11734 dist[2]=0.0434
idx[3]=49229 dist[3]=0.0555
idx[4]=4958 dist[4]=0.0728
radiusSearch(): radius=0.1 -> 11 matches
idx[0]=56340 dist[0]=0.0289
idx[1]=22009 dist[1]=0.0398
idx[2]=11734 dist[2]=0.0434
idx[3]=49229 dist[3]=0.0555
idx[4]=4958 dist[4]=0.0728
idx[5]=77224 dist[5]=0.0776
idx[6]=24138 dist[6]=0.09
idx[7]=30179 dist[7]=0.0901
idx[8]=56350 dist[8]=0.0949
idx[9]=65187 dist[9]=0.0954
idx[10]=14866 dist[10]=0.0979
PASS: pointcloud_kdd_radius
MEM: 6805 3595 678 18 0 3041 0
MEM: 10999 7879 742 18 0 7235 0
knnSearch(nn=1):
ret_index=513181 out_dist_sqr=0.0002
Worst pair: idx=867662 dist=0.9998
MEM: 9737 6662 774 18 0 5973 0
MEM: 15050 12008 774 18 0 11286 0
knnSearch(nn=1):
ret_index=747356 out_dist_sqr=0.0021
Worst pair: idx=174465 dist=0.9996
PASS: pointcloud_example
Generating 1000000 point cloud...done
MEM: 6800 3637 719 13 0 3041 0
MEM: 10994 7876 735 13 0 7235 0
knnSearch(nn=1):
ret_index=36045 out_dist_sqr=0.0018
Generating 1000000 point cloud...done
MEM: 9731 6655 767 13 0 5972 0
MEM: 15045 12001 767 13 0 11286 0
knnSearch(nn=1):
ret_index=699465 out_dist_sqr=0.0037
PASS: pointcloud_adaptor_example
Generating 1000 random points...done
knnSearch(nn=3):
ret_index[0]=561 out_dist_sqr=234.302
ret_index[1]=468 out_dist_sqr=286.799
ret_index[2]=832 out_dist_sqr=291.426
PASS: vector_of_vectors_example
Generating 1000 random points...done
knnSearch(nn=3):
ret_index[0]=561 out_dist_sqr=234.302
ret_index[1]=468 out_dist_sqr=286.799
ret_index[2]=832 out_dist_sqr=291.426
PASS: matrix_example
==================
All 5 tests passed
==================
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/nanoflann'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/nanoflann'
Making check in metaphysicl/0.2.0
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0'
Making check in src
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/src'
make check-am
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/src'
make[4]: Nothing to be done for 'check-am'.
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/src'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/src'
Making check in test
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make check-am
make[4]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make compare_types_unit derivs_unit divgrad_unit dynamic_sparse_vector_navier_unit dynamic_sparse_vector_pde_unit identities_unit instantiations_unit main_unit shadow_dynamic_sparse_vector_navier_unit shadow_dynamic_sparse_vector_pde_unit shadow_sparse_struct_navier_unit shadow_sparse_struct_pde_unit shadow_sparse_vector_navier_unit shadow_sparse_vector_pde_unit shadow_vector_navier_unit shadow_vector_pde_unit sparse_derivs_unit sparse_identities_unit sparse_struct_navier_unit sparse_struct_pde_unit sparse_vector_navier_unit sparse_vector_pde_unit testheaders_unit testopt_unit vector_navier_unit vector_pde_unit dualnamedarray_unit namedindexarray_unit physics_unit
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make[5]: 'compare_types_unit' is up to date.
make[5]: 'derivs_unit' is up to date.
make[5]: 'divgrad_unit' is up to date.
make[5]: 'dynamic_sparse_vector_navier_unit' is up to date.
make[5]: 'dynamic_sparse_vector_pde_unit' is up to date.
make[5]: 'identities_unit' is up to date.
make[5]: 'instantiations_unit' is up to date.
make[5]: 'main_unit' is up to date.
make[5]: 'shadow_dynamic_sparse_vector_navier_unit' is up to date.
make[5]: 'shadow_dynamic_sparse_vector_pde_unit' is up to date.
make[5]: 'shadow_sparse_struct_navier_unit' is up to date.
make[5]: 'shadow_sparse_struct_pde_unit' is up to date.
make[5]: 'shadow_sparse_vector_navier_unit' is up to date.
make[5]: 'shadow_sparse_vector_pde_unit' is up to date.
make[5]: 'shadow_vector_navier_unit' is up to date.
make[5]: 'shadow_vector_pde_unit' is up to date.
make[5]: 'sparse_derivs_unit' is up to date.
make[5]: 'sparse_identities_unit' is up to date.
make[5]: 'sparse_struct_navier_unit' is up to date.
make[5]: 'sparse_struct_pde_unit' is up to date.
make[5]: 'sparse_vector_navier_unit' is up to date.
make[5]: 'sparse_vector_pde_unit' is up to date.
make[5]: 'testheaders_unit' is up to date.
make[5]: 'testopt_unit' is up to date.
make[5]: 'vector_navier_unit' is up to date.
make[5]: 'vector_pde_unit' is up to date.
make[5]: 'dualnamedarray_unit' is up to date.
make[5]: 'namedindexarray_unit' is up to date.
make[5]: 'physics_unit' is up to date.
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make check-TESTS
make[5]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make[6]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
PASS: compare_types_unit
PASS: derivs_unit
PASS: divgrad_unit
PASS: dynamic_sparse_vector_pde_unit
PASS: identities_unit
PASS: instantiations_unit
PASS: main_unit
PASS: shadow_dynamic_sparse_vector_pde_unit
PASS: shadow_sparse_struct_navier_unit
PASS: shadow_sparse_struct_pde_unit
PASS: shadow_sparse_vector_navier_unit
PASS: shadow_sparse_vector_pde_unit
PASS: shadow_vector_navier_unit
PASS: shadow_vector_pde_unit
PASS: sparse_derivs_unit
PASS: sparse_identities_unit
PASS: sparse_struct_navier_unit
PASS: sparse_struct_pde_unit
PASS: sparse_vector_navier_unit
PASS: sparse_vector_pde_unit
PASS: testheaders_unit
PASS: testopt_unit
PASS: vector_navier_unit
PASS: vector_pde_unit
PASS: dualnamedarray_unit
PASS: namedindexarray_unit
PASS: physics_unit
============================================================================
Testsuite summary for metaphysicl 0.2.0
============================================================================
# TOTAL: 27
# PASS: 27
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[6]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make[5]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make[4]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/test'
Making check in doxygen
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/doxygen'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0/doxygen'
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0'
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib/metaphysicl/0.2.0'
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib'
make[1]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/contrib'
Making check in examples
make[1]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples'
Making check in introduction/introduction_ex1
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex1'
make example-dbg example-devel example-opt run.sh
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex1'
make[3]: 'example-dbg' is up to date.
make[3]: 'example-devel' is up to date.
make[3]: 'example-opt' is up to date.
make[3]: Nothing to be done for 'run.sh'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex1'
make check-TESTS
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex1'
***************************************************************
* Running Example introduction_ex1:
* ./example-dbg -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
…----------------------------------------------------------------------------
| Reference count information |
----------------------------------------------------------------------------
| N7libMesh15GhostingFunctorE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh4ElemE reference count information:
| Creations: 2
| Destructions: 2
| N7libMesh4NodeE reference count information:
| Creations: 27
| Destructions: 27
| N7libMesh9DofObjectE reference count information:
| Creations: 29
| Destructions: 29
----------------------------------------------------------------------------
***************************************************************
* Done Running Example introduction_ex1:
* ./example-dbg -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-devel -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
***************************************************************
* Done Running Example introduction_ex1:
* ./example-devel -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-opt -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
***************************************************************
* Done Running Example introduction_ex1:
* ./example-opt -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-dbg -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
Option left: name:-o value: output.xda
----------------------------------------------------------------------------
| Reference count information |
----------------------------------------------------------------------------
| N7libMesh15GhostingFunctorE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh4ElemE reference count information:
| Creations: 2
| Destructions: 2
| N7libMesh4NodeE reference count information:
| Creations: 27
| Destructions: 27
| N7libMesh9DofObjectE reference count information:
| Creations: 29
| Destructions: 29
----------------------------------------------------------------------------
***************************************************************
* Done Running Example introduction_ex1:
* ./example-dbg -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-devel -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
Option left: name:-o value: output.xda
***************************************************************
* Done Running Example introduction_ex1:
* ./example-devel -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-opt -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
Option left: name:-o value: output.xda
***************************************************************
* Done Running Example introduction_ex1:
* ./example-opt -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-dbg -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xdr
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
Option left: name:-o value: output.xdr
----------------------------------------------------------------------------
| Reference count information |
----------------------------------------------------------------------------
| N7libMesh15GhostingFunctorE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh4ElemE reference count information:
| Creations: 2
| Destructions: 2
| N7libMesh4NodeE reference count information:
| Creations: 27
| Destructions: 27
| N7libMesh9DofObjectE reference count information:
| Creations: 29
| Destructions: 29
----------------------------------------------------------------------------
***************************************************************
* Done Running Example introduction_ex1:
* ./example-dbg -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xdr
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-devel -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xdr
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
Option left: name:-o value: output.xdr
***************************************************************
* Done Running Example introduction_ex1:
* ./example-devel -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xdr
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-opt -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xdr
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
Option left: name:-o value: output.xdr
***************************************************************
* Done Running Example introduction_ex1:
* ./example-opt -d 3 /home/niloufar/LibMesh/libmesh-1.3.0/reference_elements/3D/one_hex27.xda -o output.xdr
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-dbg -d 3 output.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
----------------------------------------------------------------------------
| Reference count information |
----------------------------------------------------------------------------
| N7libMesh15GhostingFunctorE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh4ElemE reference count information:
| Creations: 2
| Destructions: 2
| N7libMesh4NodeE reference count information:
| Creations: 27
| Destructions: 27
| N7libMesh9DofObjectE reference count information:
| Creations: 29
| Destructions: 29
----------------------------------------------------------------------------
***************************************************************
* Done Running Example introduction_ex1:
* ./example-dbg -d 3 output.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-devel -d 3 output.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
***************************************************************
* Done Running Example introduction_ex1:
* ./example-devel -d 3 output.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-opt -d 3 output.xda
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
***************************************************************
* Done Running Example introduction_ex1:
* ./example-opt -d 3 output.xda
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-dbg -d 3 output.xdr
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
----------------------------------------------------------------------------
| Reference count information |
----------------------------------------------------------------------------
| N7libMesh15GhostingFunctorE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh4ElemE reference count information:
| Creations: 2
| Destructions: 2
| N7libMesh4NodeE reference count information:
| Creations: 27
| Destructions: 27
| N7libMesh9DofObjectE reference count information:
| Creations: 29
| Destructions: 29
----------------------------------------------------------------------------
***************************************************************
* Done Running Example introduction_ex1:
* ./example-dbg -d 3 output.xdr
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-devel -d 3 output.xdr
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
***************************************************************
* Done Running Example introduction_ex1:
* ./example-devel -d 3 output.xdr
***************************************************************
***************************************************************
* Running Example introduction_ex1:
* ./example-opt -d 3 output.xdr
***************************************************************
Mesh Information:
elem_dimensions()={3}
spatial_dimension()=3
n_nodes()=27
n_local_nodes()=27
n_elem()=1
n_local_elem()=1
n_active_elem()=1
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
Option left: name:-d value: 3
***************************************************************
* Done Running Example introduction_ex1:
* ./example-opt -d 3 output.xdr
***************************************************************
PASS: run.sh
=============
1 test passed
=============
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex1'
make[2]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex1'
Making check in introduction/introduction_ex2
make[2]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex2'
make example-dbg example-devel example-opt run.sh
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex2'
make[3]: 'example-dbg' is up to date.
make[3]: 'example-devel' is up to date.
make[3]: 'example-opt' is up to date.
make[3]: Nothing to be done for 'run.sh'.
make[3]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex2'
make check-TESTS
make[3]: Entering directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex2'
***************************************************************
* Running Example introduction_ex2:
* ./example-dbg
***************************************************************
Running /home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex2/.libs/example-dbg
Mesh Information:
elem_dimensions()={2}
spatial_dimension()=2
n_nodes()=36
n_local_nodes()=36
n_elem()=25
n_local_elem()=25
n_active_elem()=25
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
EquationSystems
n_systems()=2
System #1, "Complex System"
Type "Explicit"
Variables={ "c" "T" } "dv"
Finite Element Types="LAGRANGE" "MONOMIAL"
Approximation Orders="FIRST" "SECOND"
n_dofs()=222
n_local_dofs()=222
n_constrained_dofs()=0
n_local_constrained_dofs()=0
n_vectors()=1
n_matrices()=0
DofMap Sparsity
Average On-Processor Bandwidth <= 0
Average Off-Processor Bandwidth <= 0
Maximum On-Processor Bandwidth <= 0
Maximum Off-Processor Bandwidth <= 0
DofMap Constraints
Number of DoF Constraints = 0
System #0, "Simple System"
Type "TransientLinearImplicit"
Variables="u"
Finite Element Types="LAGRANGE"
Approximation Orders="FIRST"
n_dofs()=36
n_local_dofs()=36
n_constrained_dofs()=0
n_local_constrained_dofs()=0
n_vectors()=3
n_matrices()=1
DofMap Sparsity
Average On-Processor Bandwidth <= 7.11111
Average Off-Processor Bandwidth <= 0
Maximum On-Processor Bandwidth <= 9
Maximum Off-Processor Bandwidth <= 0
DofMap Constraints
Number of DoF Constraints = 0
----------------------------------------------------------------------------
| Reference count information |
----------------------------------------------------------------------------
| N7libMesh10FEAbstractE reference count information:
| Creations: 9
| Destructions: 9
| N7libMesh10Parameters5ValueE reference count information:
| Creations: 5
| Destructions: 5
| N7libMesh12LinearSolverIdEE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh12SparseMatrixIdEE reference count information:
| Creations: 4
| Destructions: 4
| N7libMesh13NumericVectorIdEE reference count information:
| Creations: 13
| Destructions: 13
| N7libMesh15EquationSystemsE reference count information:
| Creations: 1
| Destructions: 1
| N7libMesh15GhostingFunctorE reference count information:
| Creations: 5
| Destructions: 5
| N7libMesh4ElemE reference count information:
| Creations: 106
| Destructions: 106
| N7libMesh4NodeE reference count information:
| Creations: 36
| Destructions: 36
| N7libMesh6DofMapE reference count information:
| Creations: 2
| Destructions: 2
| N7libMesh6SystemE reference count information:
| Creations: 2
| Destructions: 2
| N7libMesh9DofObjectE reference count information:
| Creations: 142
| Destructions: 142
----------------------------------------------------------------------------
***************************************************************
* Done Running Example introduction_ex2:
* ./example-dbg
***************************************************************
***************************************************************
* Running Example introduction_ex2:
* ./example-devel
***************************************************************
Running /home/niloufar/LibMesh/libmesh-1.3.0/examples/introduction/introduction_ex2/.libs/example-devel
Mesh Information:
elem_dimensions()={2}
spatial_dimension()=2
n_nodes()=36
n_local_nodes()=36
n_elem()=25
n_local_elem()=25
n_active_elem()=25
n_subdomains()=1
n_partitions
|
|
I don't see any error message in what you pasted into your comment, possibly because it was too long for GitHub. Please post just the error instead of all of the output of 'make check'. |
|
You can see part of make check text as following:
* Running Example optimization_ex1:
* ./example-dbg -tao_monitor -tao_view -tao_type nls
***************************************************************
Mesh Information:
elem_dimensions()={2}
spatial_dimension()=2
n_nodes()=441
n_local_nodes()=441
n_elem()=100
n_local_elem()=100
n_active_elem()=100
n_subdomains()=1
n_partitions()=1
n_processors()=1
n_threads()=1
processor_id()=0
EquationSystems
n_systems()=1
System #0, "Optimization"
Type "Optimization"
Variables="u"
Finite Element Types="LAGRANGE"
Approximation Orders="SECOND"
n_dofs()=441
n_local_dofs()=441
n_constrained_dofs()=80
n_local_constrained_dofs()=80
n_vectors()=4
n_matrices()=2
DofMap Sparsity
Average On-Processor Bandwidth <= 14.8776
Average Off-Processor Bandwidth <= 0
Maximum On-Processor Bandwidth <= 25
Maximum Off-Processor Bandwidth <= 0
DofMap Constraints
Number of DoF Constraints = 80
Average DoF Constraint Length= 0
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Object is in wrong state
[0]PETSC ERROR: Vec is locked read only, argument # 1
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.9.2, May, 20, 2018
[0]PETSC ERROR:
/home/niloufar/LibMesh/libmesh-1.3.0/examples/optimization/optimization_ex1/.libs/example-dbg
on a named niloufar-K46CB by niloufar Sun Jul 1 11:33:01 2018
[0]PETSC ERROR: Configure options
--prefix=/home/niloufar/LibMesh/petsc-3.9.2/CONF --download-fblaslapack=1
--with-shared-libraries=1
[0]PETSC ERROR: #1 VecGetArray() line 1575 in
/home/niloufar/LibMesh/petsc-3.9.2/src/vec/vec/interface/rvector.c
[0]PETSC ERROR: #2 VecSetValues_MPI() line 948 in
/home/niloufar/LibMesh/petsc-3.9.2/src/vec/vec/impls/mpi/pdvec.c
[0]PETSC ERROR: #3 VecSetValues() line 850 in
/home/niloufar/LibMesh/petsc-3.9.2/src/vec/vec/interface/rvector.c
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
FAIL: run.sh
====================================================
1 of 1 test failed
Please report to libmesh-users@lists.sourceforge.net
====================================================
Makefile:964: recipe for target 'check-TESTS' failed
make[4]: *** [check-TESTS] Error 1
make[4]: Leaving directory
'/home/niloufar/LibMesh/libmesh-1.3.0/examples/optimization/optimization_ex1'
Makefile:1087: recipe for target 'check-am' failed
make[3]: *** [check-am] Error 2
make[3]: Leaving directory
'/home/niloufar/LibMesh/libmesh-1.3.0/examples/optimization/optimization_ex1'
Makefile:1090: recipe for target 'check' failed
make[2]: *** [check] Error 2
make[2]: Leaving directory
'/home/niloufar/LibMesh/libmesh-1.3.0/examples/optimization/optimization_ex1'
Makefile:716: recipe for target 'check-recursive' failed
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory '/home/niloufar/LibMesh/libmesh-1.3.0/examples'
Makefile:29212: recipe for target 'check-recursive' failed
make: *** [check-recursive] Error 1
…On Mon, Jul 9, 2018 at 5:13 PM, John W. Peterson ***@***.***> wrote:
I don't see any error message in what you pasted into your comment,
possibly because it was too long for GitHub. Please post just the error
instead of all of the output of 'make check'.
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Hmm... this error usually means you have PETSc compiled in debug mode, and we are attempting to modify a vector (usually the solution vector) at a time when it is not allowed. This is the first time I've seen the error in @fdkong, I believe you have tested libMesh master and MOOSE with PETSc 3.9, but what about in debug mode? |
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I haven't tested PETSc in the debug mode for a while because we actually have similar issues in MOOSE, but I do not have a good idea to fix it. |
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I have compiled PETSc 3.7.7 in the same way, but I have not got this error! |
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Thanks for the update! If your system is working with 3.7.7 then it's probably not a system specific problem, we're almost certainly doing something that we shouldn't be but that older PETSc is letting us get away with. I'll build a PETSc 3.9.3 module today and see if I can replicate the failure. |
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Which petsc version officially supported by the new version of libmesh (1.3.0)?
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