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This repository has been archived by the owner on Feb 11, 2020. It is now read-only.
A user request a method to compare the same GeneSet names of different GeneSetCollections (GSC), by counting the number of genes in each.
Could go on the line of compare(GSC1, GSC2) and then look for same pathways/GeneSet names and compare the number in each case. Could return the total number of shared names and the differences between them in a data.frame.
Would it be expandable to more than two GSC? Yes if in the names of the data.frame we set the names of the GSC being compared and return NA if the term is not shared between two GSC.
Like: Terms GSC1_GSC2 GSC1_GSC3 GSC2_GSC3
The text was updated successfully, but these errors were encountered:
A user request a method to compare the same GeneSet names of different GeneSetCollections (GSC), by counting the number of genes in each.
Could go on the line of
compare(GSC1, GSC2)
and then look for same pathways/GeneSet names and compare the number in each case. Could return the total number of shared names and the differences between them in a data.frame.Would it be expandable to more than two GSC? Yes if in the names of the data.frame we set the names of the GSC being compared and return NA if the term is not shared between two GSC.
Like:
Terms GSC1_GSC2 GSC1_GSC3 GSC2_GSC3
The text was updated successfully, but these errors were encountered: