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Make it more general #19

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llrs opened this issue Nov 20, 2018 · 3 comments
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Make it more general #19

llrs opened this issue Nov 20, 2018 · 3 comments
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enhancement 🍦 New feature or request question ❓ Further information is requested

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llrs commented Nov 20, 2018

At the moment it is only designed for GeneSetCollections, but I expect that it will be a need to cluster cell lines. As such it would be interesting to have a general set class in bioconductor and then a subclass "GeneSet", and equivalent "SetCollection" and the "GeneSetCollection".

This would require a feature request in https://github.com/bioconductor/GSEABase
@llrs llrs added enhancement 🍦 New feature or request question ❓ Further information is requested labels Nov 20, 2018
@llrs llrs self-assigned this Nov 20, 2018
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llrs commented Nov 20, 2018

It would require renaming everything, from gene to element and from pathway to set. But it could make it more general. Also related to #4 reference to the set package.

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llrs commented Nov 26, 2018

Interesting relevant packages:

sets
hierarchicalSets: thomasp85/hierarchicalSets

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llrs commented Nov 27, 2018

Work (in progress) on llrs/GSEABase#1

@llrs llrs closed this as completed Jan 11, 2019
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