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60 Open 132 Closed
60 Open 132 Closed
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Issues list

BEASTling does not clean up concept names with commas properly
#261 opened May 11, 2022 by Anaphory
Binary CTMC binarised=True
#260 opened Jul 23, 2021 by acraevschi
'BinaryModel' object has no attribute 'share_params'
#258 opened Aug 26, 2020 by Anaphory
11
Should __distribution__ be a property of all clocks?
#257 opened Jun 28, 2020 by Anaphory
Report could use slightly more clever templating
#256 opened Jun 28, 2020 by Anaphory
Should base-clocks/models/priors be abstract?
#255 opened Jun 28, 2020 by Anaphory
Document and Unify Exit Codes
#254 opened Jun 28, 2020 by Anaphory
PyYAML, an indirect dependency, needs Python>3.4 bug question
#253 opened Jun 21, 2020 by Anaphory
4
LogNormal Relaxed Clock parameterized by “variance”, is actually “stdev in log space”
#252 opened Jun 21, 2020 by Anaphory
Make TreePrior.add_state_nodes use state instead of beastxml enhancement
#251 opened Jun 20, 2020 by Anaphory
@Anaphory
OSError: File name too long, instead of being interpreted as list bug
#249 opened Aug 27, 2019 by Anaphory
1
Hack BEAST XML using DOM notation? question
#246 opened Aug 9, 2019 by Anaphory
2
Remaining synonym issues
#244 opened Aug 9, 2019 by Anaphory
Unify file handling
#241 opened Aug 1, 2019 by xrotwang
@xrotwang
2
"The Yule model is not particularly suitable for linguistic analyses, however it is currently the best BEAST has to offer."
#233 opened Apr 17, 2019 by SimonGreenhill
7
CLDF dataset loading pains
#232 opened Apr 15, 2019 by lmaurits
2 tasks done
19
Do we want shorter alignment lines? enhancement question
#231 opened Apr 8, 2019 by Anaphory
@Anaphory
3
Encoding in tutorial file bug
#227 opened Nov 23, 2018 by Snedronningen
1
@Anaphory
10
Is handling of multiple values correct? help wanted needs test question
#225 opened Nov 20, 2018 by Anaphory 1.5.0
2
Monophyly needs tests needs test
#223 opened Nov 20, 2018 by Anaphory 1.5.0
Path sampling needs tests needs test
#222 opened Nov 20, 2018 by Anaphory 1.5.0
Geography needs tests needs test
#221 opened Nov 20, 2018 by Anaphory
2 tasks
1.5.0
1
config.prior vs. config.sample_from_prior enhancement question
#220 opened Nov 20, 2018 by Anaphory 1.5.0
Improve configuration testing system
#219 opened Nov 16, 2018 by Anaphory Happy Future
1
Extract tree and tree prior handling into separate modules needs test waiting for merge
#218 opened Nov 16, 2018 by Anaphory 1.5.0
1
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