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33 Open 424 Closed
33 Open 424 Closed
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Issues list

A Segmentation fault occurred in the sambamba markdup bug
#520 opened Aug 20, 2024 by Xiangyue-Meng
sambamba markdup stuck in the finding positions of the duplicate reads in the file...
#519 opened Jul 11, 2024 by xiechangxiao
sambamba (v. 0.8.0) sort: exit code 271 bug
#517 opened May 14, 2024 by jeffreycyyu
sambamba-sort: index [1] exceeds array of length 1 bug
#516 opened Apr 18, 2024 by ScienceAdvances
Sambamba slice - 94 Segmentation fault (core dumped) bug
#515 opened Feb 5, 2024 by alexvasilikop
2
mpileup fail to execute bin/sh bug
#514 opened Nov 23, 2023 by ghost
sambamba slice piped with sambamba view is having runtime problem when running in parallel bug
#513 opened Oct 22, 2023 by yangyxt
problem of deduplication bug
#512 opened Sep 20, 2023 by crazysummerW
Support removal of duplicates for paired-end reads bug
#511 opened Sep 14, 2023 by rikrdo89
Difference of depth/mean coverage calculation among sambamba, bedtools, and mosdepth in high coverage panel data
#510 opened Sep 13, 2023 by ipstone
sambamba-markdup：(No space left on device)
#509 opened Sep 6, 2023 by weirdo-onlooker
1
Sambamba subsample produces truncated BAMs bug
#506 opened Jun 14, 2023 by Sven-Winter
Sambamba depth output repeats positions! bug
#505 opened May 30, 2023 by Sven-Winter
sambamba-markdup: Range violation bug
#501 opened Feb 16, 2023 by Cynthia1012
2
Can you add sort by tag function? Follow the checklist to report an issue Did you follow the https://github.com/biod/sambamba#check-list ?
#499 opened Dec 13, 2022 by cherryamme
1
extends past source array of length 131072 bug
#498 opened Dec 9, 2022 by charliechen912ilovbash
sambamba depth region: Segmentation fault (core dumped) Follow the checklist to report an issue Did you follow the https://github.com/biod/sambamba#check-list ? support request - please use google groups instead see the README
#492 opened Jul 13, 2022 by QichenFU
depth region -L for multiple bam
#491 opened Jun 10, 2022 by yuanjianwen-gif
Feature request: fixmate like samtools enhancement help wanted
#489 opened May 24, 2022 by kaji331
1
Feature request: Slice BAM file by query name enhancement help wanted
#488 opened May 9, 2022 by yangyxt
1
can sambamba markdup give duprate concrete number? bug
#487 opened Apr 27, 2022 by asmlgkj
sambamba --version's output doubled bug
#486 opened Mar 28, 2022 by kim-fehl
1
Samtools + libdeflate out performs sambamba on a single thread enhancement
#485 opened Feb 26, 2022 by mebbert
3
sambamba-markdup: Unexpected '-' when converting from type string to type ulong support request - please use google groups instead see the README
#476 opened May 6, 2021 by ls233
1
downsampling by sambamba with seed support request - please use google groups instead see the README
#471 opened Apr 21, 2021 by dulunar
1
ProTip! Exclude everything labeled bug with -label:bug.