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check raw_step5 #20

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unidesigner opened this issue Sep 18, 2010 · 2 comments
Closed

check raw_step5 #20

unidesigner opened this issue Sep 18, 2010 · 2 comments
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@unidesigner
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check with ale if for non-linear registration mode the matrix copying is correct.
use 'T1-TO-T2.mat'?

@unidesigner
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what about this:
#if [ ${D} != 'fsmask_1mm' ]; then
# cp "${TO}/4__CMT/fs_output/registred/HR__registered-TO-b0/${D}.nii" "${TO}/4__CMT/fs_output/registred/HR__registered-TO-b0/${D}__forRoiSizeCalc.nii"
#fi

@unidesigner
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this can be removed.
ale explained it. it should be correct, but maybe improved.

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