You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
On line 88, read_dict[r][0] will be assigned with (tr, rec.get_tag("AS"), tr_cov, float(rec.query_alignment_length)/rec.infer_read_length(), rec.mapping_quality), contradicting the comment on line 106# transcript_id, pct_ref, pct_reads.
hit[1] > 0.8 was used on line 119, which would be evaluating alignment score > 0.8.
0.8 seems to be a very low threshold for alignment scores, did you mean to evaluate pct_ref > 0.8 (i.e. hit[2] > 0.8)?
The text was updated successfully, but these errors were encountered:
On line 88, read_dict[r][0] will be assigned with
(tr, rec.get_tag("AS"), tr_cov, float(rec.query_alignment_length)/rec.infer_read_length(), rec.mapping_quality)
, contradicting the comment on line 106# transcript_id, pct_ref, pct_reads
.hit[1] > 0.8
was used on line 119, which would be evaluatingalignment score > 0.8
.0.8 seems to be a very low threshold for alignment scores, did you mean to evaluate
pct_ref > 0.8
(i.e.hit[2] > 0.8
)?The text was updated successfully, but these errors were encountered: