Support data w/o control in MACS2 [Orig Title:NameError: poisson_cdf]

[nstong]

Getting this error, not getting a cdf from the right place?

Traceback (most recent call last):
File "/usr/local/bin/macs2", line 354, in
main()
File "/usr/local/bin/macs2", line 171, in main
peakdetect.call_peaks()
File "cPeakDetect.pyx", line 83, in MACS2.cPeakDetect.PeakDetect.call_peaks (MACS2/cPeakDetect.c:1266)
File "cPeakDetect.pyx", line 316, in MACS2.cPeakDetect.PeakDetect.__call_peaks_wo_control (MACS2/cPeakDetect.c:4306)
File "cBedGraph.pyx", line 486, in MACS2.IO.cBedGraph.bedGraphTrackI.apply_func (MACS2/IO/cBedGraph.c:6431)
File "cPeakDetect.pyx", line 316, in MACS2.cPeakDetect.__call_peaks_wo_control.lambda6 (MACS2/cPeakDetect.c:3835)
NameError: poisson_cdf

[taoliu]

Hi,

Is it the recent 2.0.4 version from github?

You may need to clean ALL old codes from your server. Try to delete /usr/local/bin/macs2 and /usr/local/lib/python2.6/site-packages/MACS2 ( depends on your system) and delete the source code directory, re-checkout codes from github and install it again.

HTH,
Tao

[taoliu]

Oh... You are running it w/o control? I haven't completed the functions w/o control data... Maybe next alpha version. Current MACS2 are not mature in every situation...

Sorry about that!

Tao

[nstong]

Yes I am. Thanks for clearing that up and for the quick response.

On Wed, Jul 6, 2011 at 3:54 PM, taoliu <
reply@reply.github.com>wrote:

Oh... You are running it w/o control? I haven't completed the functions w/o
control data... Maybe next alpha version. Current MACS2 are not mature in
every situation...

Sorry about that!

Tao

Reply to this email directly or view it on GitHub:
#2 (comment)

Nick Stong
PhD Candidate
Genomics and Computational Biology

Riethman Lab
The Wistar Institute