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This software constitutes a joint work and the contributions of individual
authors are subject to different licenses. Contributions and licenses are
listed in the applicable source files, with specific details on each individual
contribution captured in the revision control system.
This software is based on RELEASE_1-3_2004-03-17 of the 'Celera Assembler'
(http://wgs-assembler.sourceforge.net) as distributed by Applera Corporation
under the GNU General Public License, version 2. Canu branched from Celera
Assembler at revision 4587.
This software is based on the 'kmer package' (http://kmer.sourceforge.net) as
distributed by Applera Corporation under the GNU General Public License, version 2.
Canu branched from the kmer project at revision 1994.
This software is based on 'pbutgcns' (https://github.com/pbjd/pbutgcns) and 'FALCON'
(https://github.com/PacificBiosciences/FALCON) as released by Pacific Biosciences of
California, Inc.
For the full software distribution and modifications made under the GNU General
Public License version 2:
This program is free software; you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free Software
Foundation; either version 2 of the License, or (at your option) any later
version.
This program is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
details.
You should have received (README.license.GPL) a copy of the GNU General Public
License along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
For modifications made by the Battelle National Biodefense Institute
under the BSD 3-Clause License:
This Software was prepared for the Department of Homeland Security (DHS) by the
Battelle National Biodefense Institute, LLC (BNBI) as part of contract
HSHQDC-07-C-00020 to manage and operate the National Biodefense Analysis and
Countermeasures Center (NBACC), a Federally Funded Research and Development
Center.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of the Battelle National Biodefense Institute nor the names
of its contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
For modifications in the public domain:
PUBLIC DOMAIN NOTICE
This software is "United States Government Work" under the terms of the United
States Copyright Act. It was written as part of the authors' official duties
for the United States Government and thus cannot be copyrighted. This software
is freely available to the public for use without a copyright
notice. Restrictions cannot be placed on its present or future use.
Although all reasonable efforts have been taken to ensure the accuracy and
reliability of the software and associated data, the National Human Genome
Research Institute (NHGRI), National Institutes of Health (NIH) and the
U.S. Government do not and cannot warrant the performance or results that may
be obtained by using this software or data. NHGRI, NIH and the U.S. Government
disclaim all warranties as to performance, merchantability or fitness for any
particular purpose.
Please cite the authors in any work or product based on this material.
For software released by Pacific Biosciences of California, Inc.:
Copyright (c) 2011-2015, Pacific Biosciences of California, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted (subject to the limitations in the
disclaimer below) provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of Pacific Biosciences nor the names of its contributors
may be used to endorse or promote products derived from this software
without specific prior written permission.
NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE GRANTED BY
THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC BIOSCIENCES AND ITS
CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR
ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER
IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.