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generate output files: posmap, fasta/fastq, graph, ... #19

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brianwalenz opened this issue Jan 7, 2016 · 1 comment

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brianwalenz commented Jan 7, 2016

A summary of the assembly:

unitigs: n50, min, ave, max, total, length histogram
read stats: min, ave, max, total, X coverage, length histogram
overlaps: (hopefully done)

Outputs:
- unitigs: ~~fasta/fastq~~ (Moved to issue sequence outputs #28)
- read to unitig map, using both internal and external identifiers for reads (two different files)
- ID map, mapping internal to external read IDs
- bogart graph

brianwalenz added the enhancement label

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brianwalenz added this to the v1.1 milestone

brianwalenz mentioned this issue

sequence outputs #28

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skoren modified the milestones: v1.1, v1.3

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brianwalenz commented Jun 29, 2016

tracked elsewhere. This was open only for the mapping to external read IDs.

brianwalenz closed this as completed

aldertzomer mentioned this issue

failed correction #1073

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Malabady mentioned this issue

consensus failure #1812

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Gon1976 mentioned this issue

cns Failed #1964

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