v1.1

Features

• The Import menu options have been combined into a single Open dialog. Formats are inferred from file extensions. If a format is unknown or a reference can be provided, a new import window allows specification of the format and a reference.
• If tree leaf names don't match alignment track names (when importing either), there will now be a prompt to clear the existing data, rather than always canceling the load of the new data.
• LCB boundaries are now drawn in the Annotation View, allowing boundaries between directly adjacent LCBs (which were formerly invisible) to be seen. The boundaries will fade when zoomed out if they are too crowded.
• VCF import now supports indels. See the documentation for details and caveats.
• MAF alignments can now be imported. See the documentation for details and caveats.
• Information about Gingr (including its version) can now be seen after the splash screen is gone from the About menu item (under Help or Gingr, depending on the OS).

Bug fixes

• Non-wrapped Fasta files (with each full sequence on one line) no longer cause hangs when importing as references.
• XMFA output when the final LCB contains no variants will no longer crash or produce infinite output.
• Synteny view can now be zoomed to the nucleotide level without glitches.
• Low SNP counts no longer cause slowness & graphical artifacts when zoomed out.
• The ruler markings around indels have been fixed.