Do not automatically enable velvet in isolate mode

marbl · Aug 11, 2015 · 23f2eca · 23f2eca
1 parent 79e4f75
commit 23f2eca
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/src/runPipeline.py b/src/runPipeline.py
@@ -723,7 +723,6 @@ def printConfiguration(fileName=None):
       settings.doscaffolding = True
       selected_programs["multialign"]
       selected_programs["validate"] = ",".join(supported_programs["validate"])
-      selected_programs["assemble"] = selected_programs["assemble"] + ",velvet"
       selected_programs["findorfs"] = "prokka"
       asmScores = "%d"%(utils.SCORE_TYPE.ALL)
       skipsteps.add("Scaffold")