You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Please add complete description of output files and their content. In particular, please explain the meaning and interpretation of B0 and N0 tags relative to the following excerpt:
"...bubbles in the graphs are identified using gaftools (commit ID: 919bbec).
The function order_gfa tags the nodes of the graph to identify whether the nodes are bubble nodes (nodes inside a bubble) or scaffold nodes (nodes outside a bubble)."
Thank you for your comment, Adam.
Indeed, we need to add more documentation which we are working on. In the meantime, I wrote this quick explanation on the order_gfa subcommand, I hope it helps here.
Please add complete description of output files and their content. In particular, please explain the meaning and interpretation of B0 and N0 tags relative to the following excerpt:
"...bubbles in the graphs are identified using gaftools (commit ID: 919bbec).
The function order_gfa tags the nodes of the graph to identify whether the nodes are bubble nodes (nodes inside a bubble) or scaffold nodes (nodes outside a bubble)."
(https://www.biorxiv.org/content/10.1101/2024.04.18.590093v1.full.pdf)
The text was updated successfully, but these errors were encountered: