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Improve order_gfa documentation #21

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adadiehl opened this issue May 10, 2024 · 2 comments
Closed

Improve order_gfa documentation #21

adadiehl opened this issue May 10, 2024 · 2 comments

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@adadiehl
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Please add complete description of output files and their content. In particular, please explain the meaning and interpretation of B0 and N0 tags relative to the following excerpt:

"...bubbles in the graphs are identified using gaftools (commit ID: 919bbec).
The function order_gfa tags the nodes of the graph to identify whether the nodes are bubble nodes (nodes inside a bubble) or scaffold nodes (nodes outside a bubble)."

(https://www.biorxiv.org/content/10.1101/2024.04.18.590093v1.full.pdf)

@fawaz-dabbaghieh
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Thank you for your comment, Adam.
Indeed, we need to add more documentation which we are working on. In the meantime, I wrote this quick explanation on the order_gfa subcommand, I hope it helps here.

@adadiehl
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Thank you, this is very helpful!

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