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Multichannel tiffs are imported as single channel greyscale when imported via ui #12

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Maddonix opened this issue Apr 5, 2021 · 0 comments · Fixed by #13
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Multichannel tiffs are imported as single channel greyscale when imported via ui #12

Maddonix opened this issue Apr 5, 2021 · 0 comments · Fixed by #13
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enhancement New feature or request

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@Maddonix
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Maddonix commented Apr 5, 2021

Problem: .tiff images are with shape z,c,y,x = 1,4,1024,2048 are selected in the user deepflash google colab user interface. Image preview only shows first channel. After inspecting the image import, I saw, that the tiffile has dimensions 1024x2048 after import.

Proposed solution: Images may be imported with tifffile.imread instead of imageio.imread. Here, the channel dimensions are preserved.

@matjesg matjesg added the enhancement New feature or request label Apr 5, 2021
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