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Unable to import pylab (matplotlib._png) #1948

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amelio-vazquez-reina opened this issue Apr 26, 2013 · 7 comments
Closed

Unable to import pylab (matplotlib._png) #1948

amelio-vazquez-reina opened this issue Apr 26, 2013 · 7 comments

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@amelio-vazquez-reina
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Note: I have left a copy of this thread on StackOverflow:
http://stackoverflow.com/questions/16227285/unable-to-import-matplotlib-png-pylab

I am unable to import matplotlib._png:

import matplotlib._png as _png ImportError:
/home/james/opt/python/virtualenvs/work/lib/python2.7/site-packages/matplotlib-1.3.x-py2.7-linux-x86_64.egg   /matplotlib/_png.so:
undefined symbol: png_set_longjmp_fn

This error prevents me from running import pylab (since this ultimately imports matplotlib._png).

I installed matplotlib from source, and made sure to add the path with local installations (/home/james/local) to basedir in setupext.py before running python setup.py install.

REQUIRED DEPENDENCIES AND EXTENSIONS
                 numpy: yes [version 1.7.1]
              dateutil: yes [using dateutil version 2.1]
               tornado: yes [using tornado version 3.0.1]
             pyparsing: yes [using pyparsing version 1.5.7]
                 pycxx: yes [Couldn't import.  Using local copy.]
                libagg: yes [pkg-config information for 'libagg' could not
                        be found Using local copy.]
              freetype: yes [version 16.0.10]
                   png: yes [version 1.2.10]

My research so far:

As can be seen above, matplotlib seems to find version 1.2.10 even though the version that I have under /home/james/local is 1.6.1:

$ find . -iname '*libpng*'                                                                                                  
./libpng16.so.16.1.0
./libpng16.so
./libpng16.so.16
./libpng16.a
./libpng.a
./libpng.so
./libpng16.la
./pkgconfig/libpng.pc
./pkgconfig/libpng16.pc
./libpng.la

and I have LD_LIBRARY_PATH pointing to /home/james/local as the first directory to look into.
but matplotlib seems to have found the system version:

$ locate libpng
/usr/lib/libpng.so
/usr/lib/libpng.so.3
/usr/lib/libpng.so.3.10.0
/usr/lib/libpng12.a
/usr/lib/libpng12.so
/usr/lib/libpng12.so.0
/usr/lib/libpng12.so.0.10.0

Could this be the problem? Why am I unable to import matplotlib._png?
@mdboom
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mdboom commented Apr 26, 2013

Can you do a git clean -fxd and then post the entire build log somewhere so I can have a look? It's probably using pkgconfig to find the system libpng, but perhaps building with one and linking with the other. Is there a reason you want to use a local rather than system build of libpng?

@amelio-vazquez-reina
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Thanks @mdboom. My research in the last few hours points me in the same direction (pkg-config). However, I am relatively new to Python and I am not sure if I am updating setup.cfg correctly, so just in case, I re-cloned the directory from scratch, and tried a fresh installation without making any changes to any files.

The path where I have the right libpng library is /home/james/local. I have /home/james/local/lib as the first entry in LD_LIBRARY_PATH but this doesn't seem to be enough.

Below is the log of new installation from a new clean repository:

$ pip install -e .
Obtaining file:///nfs/vol1/opt/python/matplotlib/src/repo/matplotlib
  Running setup.py egg_info for package from file:///nfs/vol1/opt/python/matplotlib/src/repo/matplotlib
    ============================================================================
    Edit setup.cfg to change the build options

    BUILDING MATPLOTLIB
                matplotlib: yes [1.3.x]
                    python: yes [2.7.4 (default, Apr 21 2013, 18:37:10)  [GCC
                            4.1.2 20080704 (Red Hat 4.1.2-50)]]
                  platform: yes [linux2]

    REQUIRED DEPENDENCIES AND EXTENSIONS
                     numpy: yes [version 1.7.1]
                  dateutil: yes [using dateutil version 2.1]
                   tornado: yes [using tornado version 3.0.1]
                 pyparsing: yes [using pyparsing version 1.5.7]
                     pycxx: yes [Couldn't import.  Using local copy.]
                    libagg: yes [pkg-config information for 'libagg' could not
                            be found Using local copy.]
                  freetype: yes [version 16.0.10]
                       png: yes [version 1.2.10]

    OPTIONAL SUBPACKAGES
               sample_data: yes [installing]
                  toolkits: yes [installing]
                     tests: yes [using nose version 1.3.0]

    OPTIONAL BACKEND EXTENSIONS
                    macosx: no  [Mac OS-X only]
                    qt4agg: no  [not found]
                   gtk3agg: no  [Requires pygobject to be installed.]
                 gtk3cairo: no  [Requires cairo to be installed.]
                    gtkagg: no  [Requires pygtk]
                     tkagg: no  [The C/C++ header for Tk (tk.h) could not be
                            found.  You may need to install the development
                            package.]
                     wxagg: no  [requires wxPython]
                       gtk: no  [Requires pygtk]
                     qtagg: no  [not found]
                       agg: yes [installing]
                     cairo: no  [not found]

    OPTIONAL LATEX DEPENDENCIES
                    dvipng: yes [version 1.5]
               ghostscript: yes [version 8.70]
                     latex: yes [version 3.141592]
                   pdftops: yes [version 3.00]


    warning: no files found matching 'INTERACTIVE'
    warning: no files found matching 'MANIFEST'
    warning: no files found matching 'setupegg.py'
    warning: no files found matching '*' under directory 'lib/matplotlib/mpl-data/sample_data/'
Requirement already satisfied (use --upgrade to upgrade): python-dateutil in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/python_dateutil-2.1-py2.7.egg (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): tornado in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/tornado-3.0.1-py2.7.egg (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): pyparsing>=1.5.6,<2.0.0 in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/pyparsing-1.5.7-py2.7.egg (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): nose in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): six in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/six-1.3.0-py2.7.egg (from python-dateutil->matplotlib==1.3.x)
Installing collected packages: matplotlib
  Running setup.py develop for matplotlib
    ============================================================================
    Edit setup.cfg to change the build options

    BUILDING MATPLOTLIB
                matplotlib: yes [1.3.x]
                    python: yes [2.7.4 (default, Apr 21 2013, 18:37:10)  [GCC
                            4.1.2 20080704 (Red Hat 4.1.2-50)]]
                  platform: yes [linux2]

    REQUIRED DEPENDENCIES AND EXTENSIONS
                     numpy: yes [version 1.7.1]
                  dateutil: yes [using dateutil version 2.1]
                   tornado: yes [using tornado version 3.0.1]
                 pyparsing: yes [using pyparsing version 1.5.7]
                     pycxx: yes [Couldn't import.  Using local copy.]
                    libagg: yes [pkg-config information for 'libagg' could not
                            be found Using local copy.]
                  freetype: yes [version 16.0.10]
                       png: yes [version 1.2.10]

    OPTIONAL SUBPACKAGES
               sample_data: yes [installing]
                  toolkits: yes [installing]
                     tests: yes [using nose version 1.3.0]

    OPTIONAL BACKEND EXTENSIONS
                    macosx: no  [Mac OS-X only]
                    qt4agg: no  [not found]
                   gtk3agg: no  [Requires pygobject to be installed.]
                 gtk3cairo: no  [Requires cairo to be installed.]
                    gtkagg: no  [Requires pygtk]
                     tkagg: no  [The C/C++ header for Tk (tk.h) could not be
                            found.  You may need to install the development
                            package.]
                     wxagg: no  [requires wxPython]
                       gtk: no  [Requires pygtk]
                     qtagg: no  [not found]
                       agg: yes [installing]
                     cairo: no  [not found]

    OPTIONAL LATEX DEPENDENCIES
                    dvipng: yes [version 1.5]
               ghostscript: yes [version 8.70]
                     latex: yes [version 3.141592]
                   pdftops: yes [version 3.00]


    warning: no files found matching 'INTERACTIVE'
    warning: no files found matching 'MANIFEST'
    warning: no files found matching 'setupegg.py'
    warning: no files found matching '*' under directory 'lib/matplotlib/mpl-data/sample_data/'
    building 'matplotlib.ft2font' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/ft2font.cpp -o build/temp.linux-x86_64-2.7/src/ft2font.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/ft2font.cpp:7:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/src/ft2font.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lfreetype -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/ft2font.so
    /usr/bin/ld: skipping incompatible /usr/lib/libfreetype.so when searching for -lfreetype
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._png' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_png.cpp -o build/temp.linux-x86_64-2.7/src/_png.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/_png.cpp:28:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/src/_png.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lpng12 -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_png.so
    /usr/bin/ld: skipping incompatible /usr/lib/libpng12.so when searching for -lpng12
    /usr/bin/ld: skipping incompatible /usr/lib/libpng12.a when searching for -lpng12
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._image' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_image.cpp -o build/temp.linux-x86_64-2.7/src/_image.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/_image.cpp:12:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_bezier_arc.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_curves.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_image_filters.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_trans_affine.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_contour.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_dash.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_stroke.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/src/_image.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_image.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib.ttconv' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_ttconv.cpp -o build/temp.linux-x86_64-2.7/src/_ttconv.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c ttconv/pprdrv_tt.cpp -o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c ttconv/pprdrv_tt2.cpp -o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt2.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c ttconv/ttutil.cpp -o build/temp.linux-x86_64-2.7/ttconv/ttutil.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/src/_ttconv.o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt.o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt2.o build/temp.linux-x86_64-2.7/ttconv/ttutil.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/ttconv.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._path' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_path.cpp -o build/temp.linux-x86_64-2.7/src/_path.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_path_iterator.h:7,
                     from src/_path.cpp:3:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/path_cleanup.cpp -o build/temp.linux-x86_64-2.7/src/path_cleanup.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/path_cleanup.cpp:5:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/agg_py_transforms.cpp -o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_transforms.cpp:6:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_bezier_arc.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_curves.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_image_filters.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_trans_affine.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_contour.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_dash.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_stroke.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/src/_path.o build/temp.linux-x86_64-2.7/src/path_cleanup.o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_path.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._cntr' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/cntr.c -o build/temp.linux-x86_64-2.7/src/cntr.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/cntr.c:23:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/src/cntr.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_cntr.so
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._delaunay' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/_delaunay.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/_delaunay.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from lib/matplotlib/delaunay/VoronoiDiagramGenerator.h:34,
                     from lib/matplotlib/delaunay/_delaunay.cpp:6:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/VoronoiDiagramGenerator.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/VoronoiDiagramGenerator.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from lib/matplotlib/delaunay/VoronoiDiagramGenerator.cpp:38:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/delaunay_utils.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/delaunay_utils.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/natneighbors.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/natneighbors.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/_delaunay.o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/VoronoiDiagramGenerator.o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/delaunay_utils.o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/natneighbors.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_delaunay.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._tri' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/tri/_tri.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/tri/_tri.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from lib/matplotlib/tri/_tri.h:68,
                     from lib/matplotlib/tri/_tri.cpp:8:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/lib/matplotlib/tri/_tri.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_tri.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib.backends._backend_agg' extension
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/agg_py_transforms.cpp -o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_transforms.cpp:6:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_backend_agg.cpp -o build/temp.linux-x86_64-2.7/src/_backend_agg.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_path_iterator.h:7,
                     from src/_backend_agg.h:43,
                     from src/_backend_agg.cpp:12:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_bezier_arc.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_curves.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_image_filters.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_trans_affine.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_contour.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_dash.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_stroke.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o build/temp.linux-x86_64-2.7/src/_backend_agg.o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lfreetype -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/backends/_backend_agg.so
    /usr/bin/ld: skipping incompatible /usr/lib/libfreetype.so when searching for -lfreetype
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    Creating /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/matplotlib.egg-link (link to lib)
    Adding matplotlib 1.3.x to easy-install.pth file

    Installed /nfs/vol1/opt/python/matplotlib/src/repo/matplotlib/lib
Successfully installed matplotlib
Cleaning up...

@mdboom
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mdboom commented Apr 26, 2013

To use a custom library, one would need to provide both an include path and library path. Have you tried setting CFLAGS to -I/home/james/local/include/libpng16? (Or whatever the path to the libpng include files are on your system?)

@amelio-vazquez-reina
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To clarify, the "system" version of libpng that I have is 1.2.10. It is installed under /usr/lib/, and I do not have privileges to modify anything under that path.

I have locally installed 1.6.1 under /home/james/local.

The reason why I thought I would go with the local version is two fold:

  1. It looks like 1.2.10 is quite old
  2. matplotlib is unable to import matplotlib._png (see the very top of my first post), so I thought maybe this is because the symbol png_set_longjmp_fn is not defined in older versions of libpng

@amelio-vazquez-reina
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Thank you @mdboom , yes /home/james/local/include/libpng16 is the path where I have it installed. It includes the following files:

png.h
pngconf.h
pngliboconf.h

I tried:

CFLAGS='-I/home/james/local/include/libpng16'
export CFLAGS

and then

# From the matploblib repository, with my virtualenv activated:
pip uninstall matplotlib
rm -r build
git clean -fxd
pip install -e .

but I am still unable to import pylab (I get import matplotlib._png as _png: Import Error _png.so undefined symbol: png_set_longjmp_fn)

To clarify, I did not create setup.config or made any changes to the installation files.

Below is the new installation log:

$ pip install -e .
Obtaining file:///nfs/vol1/opt/python/matplotlib/src/repo/matplotlib
  Running setup.py egg_info for package from file:///nfs/vol1/opt/python/matplotlib/src/repo/matplotlib
    ============================================================================
    Edit setup.cfg to change the build options

    BUILDING MATPLOTLIB
                matplotlib: yes [1.3.x]
                    python: yes [2.7.4 (default, Apr 21 2013, 18:37:10)  [GCC
                            4.1.2 20080704 (Red Hat 4.1.2-50)]]
                  platform: yes [linux2]

    REQUIRED DEPENDENCIES AND EXTENSIONS
                     numpy: yes [version 1.7.1]
                  dateutil: yes [using dateutil version 2.1]
                   tornado: yes [using tornado version 3.0.1]
                 pyparsing: yes [using pyparsing version 1.5.7]
                     pycxx: yes [Couldn't import.  Using local copy.]
                    libagg: yes [pkg-config information for 'libagg' could not
                            be found Using local copy.]
                  freetype: yes [version 16.0.10]
                       png: yes [version 1.2.10]

    OPTIONAL SUBPACKAGES
               sample_data: yes [installing]
                  toolkits: yes [installing]
                     tests: yes [using nose version 1.3.0]

    OPTIONAL BACKEND EXTENSIONS
                    macosx: no  [Mac OS-X only]
                    qt4agg: no  [not found]
                   gtk3agg: no  [Requires pygobject to be installed.]
                 gtk3cairo: no  [Requires cairo to be installed.]
                    gtkagg: no  [Requires pygtk]
                     tkagg: no  [The C/C++ header for Tk (tk.h) could not be
                            found.  You may need to install the development
                            package.]
                     wxagg: no  [requires wxPython]
                       gtk: no  [Requires pygtk]
                     qtagg: no  [not found]
                       agg: yes [installing]
                     cairo: no  [not found]

    OPTIONAL LATEX DEPENDENCIES
                    dvipng: yes [version 1.5]
               ghostscript: yes [version 8.70]
                     latex: yes [version 3.141592]
                   pdftops: yes [version 3.00]


    warning: no files found matching 'INTERACTIVE'
    warning: no files found matching 'MANIFEST'
    warning: no files found matching 'setupegg.py'
    warning: no files found matching '*' under directory 'lib/matplotlib/mpl-data/sample_data/'
Requirement already satisfied (use --upgrade to upgrade): python-dateutil in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/python_dateutil-2.1-py2.7.egg (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): tornado in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/tornado-3.0.1-py2.7.egg (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): pyparsing>=1.5.6,<2.0.0 in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/pyparsing-1.5.7-py2.7.egg (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): nose in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages (from matplotlib==1.3.x)
Requirement already satisfied (use --upgrade to upgrade): six in /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/six-1.3.0-py2.7.egg (from python-dateutil->matplotlib==1.3.x)
Installing collected packages: matplotlib
  Running setup.py develop for matplotlib
    ============================================================================
    Edit setup.cfg to change the build options

    BUILDING MATPLOTLIB
                matplotlib: yes [1.3.x]
                    python: yes [2.7.4 (default, Apr 21 2013, 18:37:10)  [GCC
                            4.1.2 20080704 (Red Hat 4.1.2-50)]]
                  platform: yes [linux2]

    REQUIRED DEPENDENCIES AND EXTENSIONS
                     numpy: yes [version 1.7.1]
                  dateutil: yes [using dateutil version 2.1]
                   tornado: yes [using tornado version 3.0.1]
                 pyparsing: yes [using pyparsing version 1.5.7]
                     pycxx: yes [Couldn't import.  Using local copy.]
                    libagg: yes [pkg-config information for 'libagg' could not
                            be found Using local copy.]
                  freetype: yes [version 16.0.10]
                       png: yes [version 1.2.10]

    OPTIONAL SUBPACKAGES
               sample_data: yes [installing]
                  toolkits: yes [installing]
                     tests: yes [using nose version 1.3.0]

    OPTIONAL BACKEND EXTENSIONS
                    macosx: no  [Mac OS-X only]
                    qt4agg: no  [not found]
                   gtk3agg: no  [Requires pygobject to be installed.]
                 gtk3cairo: no  [Requires cairo to be installed.]
                    gtkagg: no  [Requires pygtk]
                     tkagg: no  [The C/C++ header for Tk (tk.h) could not be
                            found.  You may need to install the development
                            package.]
                     wxagg: no  [requires wxPython]
                       gtk: no  [Requires pygtk]
                     qtagg: no  [not found]
                       agg: yes [installing]
                     cairo: no  [not found]

    OPTIONAL LATEX DEPENDENCIES
                    dvipng: yes [version 1.5]
               ghostscript: yes [version 8.70]
                     latex: yes [version 3.141592]
                   pdftops: yes [version 3.00]


    warning: no files found matching 'INTERACTIVE'
    warning: no files found matching 'MANIFEST'
    warning: no files found matching 'setupegg.py'
    warning: no files found matching '*' under directory 'lib/matplotlib/mpl-data/sample_data/'
    building 'matplotlib.ft2font' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/ft2font.cpp -o build/temp.linux-x86_64-2.7/src/ft2font.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/ft2font.cpp:7:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_False()':
    CXX/IndirectPythonInterface.cxx:505: warning: dereferencing type-punned pointer will break strict-aliasing rules
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_True()':
    CXX/IndirectPythonInterface.cxx:506: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/freetype2 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/src/ft2font.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lfreetype -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/ft2font.so
    /usr/bin/ld: skipping incompatible /usr/lib/libfreetype.so when searching for -lfreetype
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._png' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_png.cpp -o build/temp.linux-x86_64-2.7/src/_png.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/_png.cpp:28:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_False()':
    CXX/IndirectPythonInterface.cxx:505: warning: dereferencing type-punned pointer will break strict-aliasing rules
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_True()':
    CXX/IndirectPythonInterface.cxx:506: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/usr/include/libpng12 -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/src/_png.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lpng12 -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_png.so
    /usr/bin/ld: skipping incompatible /usr/lib/libpng12.so when searching for -lpng12
    /usr/bin/ld: skipping incompatible /usr/lib/libpng12.a when searching for -lpng12
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._image' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_image.cpp -o build/temp.linux-x86_64-2.7/src/_image.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/_image.cpp:12:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    src/_image.cpp: In member function 'Py::Object _image_module::frombuffer(const Py::Tuple&)':
    src/_image.cpp:1266: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_bezier_arc.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_curves.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_image_filters.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_trans_affine.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_contour.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_dash.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_stroke.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_False()':
    CXX/IndirectPythonInterface.cxx:505: warning: dereferencing type-punned pointer will break strict-aliasing rules
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_True()':
    CXX/IndirectPythonInterface.cxx:506: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/src/_image.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_image.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib.ttconv' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_ttconv.cpp -o build/temp.linux-x86_64-2.7/src/_ttconv.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c ttconv/pprdrv_tt.cpp -o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c ttconv/pprdrv_tt2.cpp -o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt2.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c ttconv/ttutil.cpp -o build/temp.linux-x86_64-2.7/ttconv/ttutil.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_False()':
    CXX/IndirectPythonInterface.cxx:505: warning: dereferencing type-punned pointer will break strict-aliasing rules
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_True()':
    CXX/IndirectPythonInterface.cxx:506: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/src/_ttconv.o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt.o build/temp.linux-x86_64-2.7/ttconv/pprdrv_tt2.o build/temp.linux-x86_64-2.7/ttconv/ttutil.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/ttconv.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._path' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_path.cpp -o build/temp.linux-x86_64-2.7/src/_path.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_path_iterator.h:7,
                     from src/_path.cpp:3:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/path_cleanup.cpp -o build/temp.linux-x86_64-2.7/src/path_cleanup.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/path_cleanup.cpp:5:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/agg_py_transforms.cpp -o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_transforms.cpp:6:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_bezier_arc.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_curves.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_image_filters.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_trans_affine.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_contour.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_dash.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_stroke.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_False()':
    CXX/IndirectPythonInterface.cxx:505: warning: dereferencing type-punned pointer will break strict-aliasing rules
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_True()':
    CXX/IndirectPythonInterface.cxx:506: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/src/_path.o build/temp.linux-x86_64-2.7/src/path_cleanup.o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_path.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._cntr' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/cntr.c -o build/temp.linux-x86_64-2.7/src/cntr.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/cntr.c:23:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    src/cntr.c: In function 'init_cntr':
    src/cntr.c:2019: warning: dereferencing type-punned pointer will break strict-aliasing rules
    src/cntr.c:2020: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/src/cntr.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_cntr.so
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._delaunay' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/_delaunay.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/_delaunay.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from lib/matplotlib/delaunay/VoronoiDiagramGenerator.h:34,
                     from lib/matplotlib/delaunay/_delaunay.cpp:6:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/VoronoiDiagramGenerator.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/VoronoiDiagramGenerator.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from lib/matplotlib/delaunay/VoronoiDiagramGenerator.cpp:38:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/delaunay_utils.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/delaunay_utils.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/delaunay/natneighbors.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/natneighbors.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/_delaunay.o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/VoronoiDiagramGenerator.o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/delaunay_utils.o build/temp.linux-x86_64-2.7/lib/matplotlib/delaunay/natneighbors.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_delaunay.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib._tri' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c lib/matplotlib/tri/_tri.cpp -o build/temp.linux-x86_64-2.7/lib/matplotlib/tri/_tri.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from lib/matplotlib/tri/_tri.h:68,
                     from lib/matplotlib/tri/_tri.cpp:8:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_False()':
    CXX/IndirectPythonInterface.cxx:505: warning: dereferencing type-punned pointer will break strict-aliasing rules
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_True()':
    CXX/IndirectPythonInterface.cxx:506: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/lib/matplotlib/tri/_tri.o build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/_tri.so
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    building 'matplotlib.backends._backend_agg' extension
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.7/src/mplutils.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/agg_py_transforms.cpp -o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_transforms.cpp:6:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c src/_backend_agg.cpp -o build/temp.linux-x86_64-2.7/src/_backend_agg.o
    In file included from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                     from /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15,
                     from src/agg_py_path_iterator.h:7,
                     from src/_backend_agg.h:43,
                     from src/_backend_agg.cpp:12:
    /home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
    src/_backend_agg.cpp: In member function 'Py::Object BufferRegion::to_string_argb(const Py::Tuple&)':
    src/_backend_agg.cpp:164: warning: dereferencing type-punned pointer will break strict-aliasing rules
    src/_backend_agg.cpp: In member function 'Py::Object RendererAgg::draw_markers(const Py::Tuple&)':
    src/_backend_agg.cpp:756: warning: dereferencing type-punned pointer will break strict-aliasing rules
    src/_backend_agg.cpp:756: warning: dereferencing type-punned pointer will break strict-aliasing rules
    src/_backend_agg.cpp:794: warning: dereferencing type-punned pointer will break strict-aliasing rules
    src/_backend_agg.cpp:794: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_bezier_arc.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_curves.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_image_filters.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_trans_affine.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_contour.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_dash.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c agg24/src/agg_vcgen_stroke.cpp -o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_False()':
    CXX/IndirectPythonInterface.cxx:505: warning: dereferencing type-punned pointer will break strict-aliasing rules
    CXX/IndirectPythonInterface.cxx: In function 'PyObject* Py::_True()':
    CXX/IndirectPythonInterface.cxx:506: warning: dereferencing type-punned pointer will break strict-aliasing rules
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o
    gcc -pthread -DNDEBUG -g -fwrapv -O3 -Wall -I/home/james/local/include/libpng16 -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -I. -I/home/james/opt/python/numpy/numpy-1.7.1/lib/python2.7/site-packages/numpy/core/include -Iagg24/include -I/usr/include/freetype2 -I/home/james/opt/python/python-2.7.4/include/python2.7 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o
    g++ -pthread -shared -L/home/james/opt/stow_all/stow_appear/lib -I/home/james/local/include/libpng16 build/temp.linux-x86_64-2.7/src/mplutils.o build/temp.linux-x86_64-2.7/src/agg_py_transforms.o build/temp.linux-x86_64-2.7/src/_backend_agg.o build/temp.linux-x86_64-2.7/agg24/src/agg_bezier_arc.o build/temp.linux-x86_64-2.7/agg24/src/agg_curves.o build/temp.linux-x86_64-2.7/agg24/src/agg_image_filters.o build/temp.linux-x86_64-2.7/agg24/src/agg_trans_affine.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_contour.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_dash.o build/temp.linux-x86_64-2.7/agg24/src/agg_vcgen_stroke.o build/temp.linux-x86_64-2.7/CXX/IndirectPythonInterface.o build/temp.linux-x86_64-2.7/CXX/cxx_extensions.o build/temp.linux-x86_64-2.7/CXX/cxxsupport.o build/temp.linux-x86_64-2.7/CXX/cxxextensions.o -L/usr/local/lib -L/usr/local/lib64 -L/usr/lib -L/usr/lib64 -L/home/james/opt/python/python-2.7.4/lib -lfreetype -lstdc++ -lm -lpython2.7 -o build/lib.linux-x86_64-2.7/matplotlib/backends/_backend_agg.so
    /usr/bin/ld: skipping incompatible /usr/lib/libfreetype.so when searching for -lfreetype
    /usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
    /usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
    /usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
    Creating /nfs/vol1/opt/python/virtualenvs/work/lib/python2.7/site-packages/matplotlib.egg-link (link to lib)
    Adding matplotlib 1.3.x to easy-install.pth file

    Installed /nfs/vol1/opt/python/matplotlib/src/repo/matplotlib/lib
Successfully installed matplotlib
Cleaning up...

@amelio-vazquez-reina
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@mdboom Found the solution. I had to update PKG_CONFIG_PATH to make it point to the location of my local libraries (/home/james/local/lib/pkgconfig). After doing this. I do not get this error anymore. (see the answer here: http://stackoverflow.com/a/16239054/283296). So I can now close this ticket. Thanks so much for your help.

Oddly I now get a different error: No module named PyQt4. I thought this was optional. Do I need to install PyQt4 to get pylab to work? Also, do you know if it will work with Qt5? I read that PyQt supports Qt5, but I don't know if matplotlib would play well with it.

@mdboom
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mdboom commented Apr 26, 2013

You may need to set your backend (in ~/.matplotlib/matplotlibrc/) to something else if PyQt4 is not installed.

I don't know of any testing that's been done with matplotlib and PyQt5 -- it may work, may not, depending on how much of the API the Qt folks have changed.

@efiring efiring closed this as completed Apr 27, 2013
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