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define dataRoot via command-line argument or environmental variable? #185
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This is a great idea! Do you want to try to add it yourself (there is a
function findDataRoot) or shall I?
…On Wed 5 Aug 2020 at 16:19, Kent Riemondy ***@***.***> wrote:
Hi,
Thanks for developing such a useful tool. I routinely generate
cellbrowsers for multiple unrelated projects and have been testing out
using dataset hierarchies to organize each independent project. I can make
this work currently by changing the global dataRoot in ~/.cellbrowser.conf
as needed to point to the project-specific collection of cellbrowsers
before running cbBuild. However, I'm wondering if there could be a
feature to define the global dataRoot as an environmental variable, a
command line option to cbBuild, or as a config parameter set in the
top-level directory for each dataset hierarchy.
e.g. as environmental variable
CBDATAROOT="/project1/celldata/"
Thanks!
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Sure, I can try to add this feature myself. Is there a testing workflow that you typically use after making code changes? |
Not yet, we’re just making one. But this particular feature wouldn’t affect
it anyways. It should be a two-line change... I hope...
…On Wed 5 Aug 2020 at 18:41, Kent Riemondy ***@***.***> wrote:
Sure, I can try to add this feature myself. Is there a testing workflow
that you typically use after making code changes?
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Hi,
Thanks for developing such a useful tool. I routinely generate cellbrowsers for multiple unrelated projects and have been testing out using dataset hierarchies to organize each independent project. I can make this work currently by changing the global
dataRoot
in~/.cellbrowser.conf
as needed to point to the project-specific collection of cellbrowsers before runningcbBuild
. However, I'm wondering if there could be a feature to define the globaldataRoot
as an environmental variable, a command line option tocbBuild
, or as a config parameter set in the top-level directory for each dataset hierarchy.e.g. as environmental variable
CBDATAROOT="/project1/celldata/"
Thanks!
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