thomasmanke is testing #71
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name: Rintro2HTML | |
run-name: ${{ github.actor }} is testing | |
on: | |
push: | |
branches: ["2024.04"] | |
permissions: | |
contents: read | |
pages: write | |
id-token: write | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
build: | |
name: Build Pages | |
runs-on: ubuntu-latest | |
# container: node:latest | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Install Conda environment with Micromamba | |
uses: mamba-org/setup-micromamba@main | |
with: | |
environment-file: configs/conda.yml | |
environment-name: Rintro | |
# caching seems to slow down jobs | |
# cache-environment: true | |
# cache-downloads: true | |
- name: Activate Environment | |
run: micromamba activate Rintro | |
- name: Check Installation | |
run: | | |
echo "after conda activate Rintro: PATH=$PATH;" | |
which R || true | |
R --version || true | |
which micromamba || true | |
micromamba --version || true | |
which quarto || true | |
quarto --version || true | |
- name: Installation non-conda packages | |
run: | | |
Rscript -e 'install.packages(c("KernSmooth"), repos="https://cloud.r-project.org")' | |
Rscript -e '.libPaths()' || true | |
- name: Render quarto | |
#continue-on-error: true # only for error tracking | |
run: | | |
quarto render . | |
- name: Show all files in docs | |
run: ls -Ral docs | |
- name: Show file contents | |
run: | | |
cat docs/index.html | |
- name: Upload | |
uses: actions/upload-pages-artifact@v3 | |
with: | |
path: ./docs | |
# - name: Deploy to GitHub Pages | |
# uses: peaceiris/actions-gh-pages@v3 | |
# if: ${{ !env.ACT }} | |
# with: | |
# github_token: ${{ secrets.GITHUB_TOKEN }} | |
# publish_dir: | | |
# ./docs | |
deploy: | |
needs: build | |
environment: | |
name: github-pages | |
url: ${{ steps.deployment.outputs.page_url }} | |
runs-on: ubuntu-latest | |
steps: | |
- name: Deploy to GitHub Pages | |
id: deployment | |
uses: actions/deploy-pages@v4 | |
# the following does not work; micromamba env and installs seem not to be recognized | |
# see also: https://github.com/quarto-dev/quarto-actions/issues/47 | |
# - name: Set up Quarto | |
# uses: quarto-dev/quarto-actions/setup@v2 | |
# - name: Render and Publish | |
# uses: quarto-dev/quarto-actions/publish@v2 | |
# with: | |
# target: gh-pages | |
# env: | |
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |