consolidate repos

[maxthemouse]

Should add the so-called BMIT toolkit that Ning created. This will likely result in some reorganization of files. I might even think about bringing back the other scripts that I split off. I had wanted to separate the scripts based on language as I thought it would be easier to use. it seems to be more work than needed and also not really needed to have multiple repositories for things which all go into one program (Fiji)