Wounderful Web Application

An awesome scratch analysis software!

Table of Contents

• About the Project
  • Built With
  • Video of Project
• Getting Started
  • Installation
• Usage
• References
• Changelog

About The Project

A wound healing assay is a laboratory technique used to study cell migration and cell–cell interaction. This is also called a scratch assay. This application does the analysis scratch assay.

Built With

• Bootstrap
• Django
• Plotly

Video of Project

Getting Started

To get a local copy up and running follow these simple example steps.

Installation

1. Clone the repo

git clone https://github.com/mberkay0/wounderful.git

2. Check if you have a virtual env

virtualenv --version

3. If (not Installed)

pip install virtualenv

4. Now create a virtual env in cd wounderful/

virtualenv venv

5. Activate a venv

~/venv/Scripts/activate

6. Then download a python modules

pip install -r requirements.txt

7. Ok we cool now start a project

python manage.py makemigrations

python manage.py migrate

python manage.py runserver

Usage

Add a wound healing data-set

Run a script

Check analysis

And download a labelled images

Check the labelled images

References

• In vitro Wound Healing Assay
• Wikipedia-Wound Healing Assay
• U-Net
• Label-free

Citations

@INPROCEEDINGS{9299213,
    author={Mayalı, Berkay and Şaylığ, Orkun and Özuysal, Özden Y. and Okvur, Devrim P. and Töreyin, Behçet Ugur and Ünay, Devrim},
    booktitle={2020 Medical Technologies Congress (TIPTEKNO)}, 
    title={Automated Analysis of Wound Healing Microscopy Image Series - A Preliminary Study}, 
    year={2020},
    pages={1-4},
    doi={10.1109/TIPTEKNO50054.2020.9299213}
  }

Changelog:

[15.09.2020]:

• Multiple dataset usage feature added and multiple analysis options added at the same time.
• Added a authentication system.
• The display feature of labelled frames in the program has been added.