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@meb-team

MEB team from LMGE (UMR CNRS 6023)

University Clermont Auvergne

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  1. PlasSuite PlasSuite Public

    Scripts for plasmidome analysis

    Shell 5 1

  2. MetaPathExplorer MetaPathExplorer Public

    MetaPathExplorer is a pipeline for analyzing and visualizing KEGG pathway maps (Kanehisa et al., 2002). These pathways are produced from high quality reads or contigs/scaffolds (metagenomes or SCs)…

    HTML 1 1

  3. AccNetPhylA AccNetPhylA Public

    This Perl script AccNetPhylA (Accessory Constellation Network with Phylogenetic Analysis) takes up most of the analysis of AccNET (Accessory Constellation Network) (Val F. Lanza et al., 2016) by re…

    Perl 1 1

  4. HpC_to_vehicle HpC_to_vehicle Public

    The perl script HpC_to_vehicle retrieves the results of the perl script AccNetPhylA (files to visualize the networks, multiple alignment of Muscle, phylogenetic results of PHYLIP, ...) to create Hp…

    Prolog 1

  5. MICROSTORE_MetaT-MetaB_Monjot_2023 MICROSTORE_MetaT-MetaB_Monjot_2023 Public

    Workflow to reproduce analysis conduced in Monjot et al., 2023

    R 1 1

  6. PANAM2 PANAM2 Public

    PANAM/PANAM2 is a pipeline for depicting the microbial community by implementing a phylogenetic approach for the annotation of the gene coding for 16S and 18S rRNA.

    Shell

Repositories

Showing 10 of 11 repositories
  • MICROSTORE_MetaT-MetaB_Monjot_2023 Public

    Workflow to reproduce analysis conduced in Monjot et al., 2023

    meb-team/MICROSTORE_MetaT-MetaB_Monjot_2023’s past year of commit activity
    R 1 1 0 0 Updated Jun 26, 2024
  • bioinfoscripts Public

    Damien's scripts for every- and anything

    meb-team/bioinfoscripts’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Jun 26, 2024
  • PlasSuite Public

    Scripts for plasmidome analysis

    meb-team/PlasSuite’s past year of commit activity
    Shell 5 1 1 0 Updated May 7, 2024
  • PANAM2 Public

    PANAM/PANAM2 is a pipeline for depicting the microbial community by implementing a phylogenetic approach for the annotation of the gene coding for 16S and 18S rRNA.

    meb-team/PANAM2’s past year of commit activity
    Shell 0 0 0 0 Updated May 2, 2023
  • BAM-Tk Public

    BAM-Tk is a software toolkit for dealing with Binary Alignment Map (BAM) files.

    meb-team/BAM-Tk’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 26, 2023
  • MetaPathExplorer Public

    MetaPathExplorer is a pipeline for analyzing and visualizing KEGG pathway maps (Kanehisa et al., 2002). These pathways are produced from high quality reads or contigs/scaffolds (metagenomes or SCs) or proteins.

    meb-team/MetaPathExplorer’s past year of commit activity
    HTML 1 1 0 0 Updated Mar 25, 2022
  • PlasSuite-Docker Public
    meb-team/PlasSuite-Docker’s past year of commit activity
    Roff 0 0 0 0 Updated Dec 21, 2021
  • Public_Tools Public

    Short pipelines and codes shared produce by MEB Team.

    meb-team/Public_Tools’s past year of commit activity
    Perl 0 0 0 0 Updated Aug 13, 2019
  • clusteringEval Public
    meb-team/clusteringEval’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 14, 2019
  • HpC_to_vehicle Public

    The perl script HpC_to_vehicle retrieves the results of the perl script AccNetPhylA (files to visualize the networks, multiple alignment of Muscle, phylogenetic results of PHYLIP, ...) to create HpC (Homologous protein Cluster) and GU (Genomic Unit), to thus make different networks representing the links between "vehicles" of genes or proteins. …

    meb-team/HpC_to_vehicle’s past year of commit activity
    Prolog 1 0 0 0 Updated Apr 9, 2018
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