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track metadata of computational experiments #165

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mattersoflight opened this issue Sep 9, 2022 · 0 comments
Closed

track metadata of computational experiments #165

mattersoflight opened this issue Sep 9, 2022 · 0 comments
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@mattersoflight
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mattersoflight commented Sep 9, 2022

We will use this google sheet to track the paths and config files of computational experiments, along with the imaging experiments.

Key decisions:

  • the table can be succinct - lot of metadata exists in the config files.
  • log the commit id of codebase with which model was trained. It can be a github tag if one of the releases was used.
  • The metadata should be machine readable, e.g., readable as a pandas dataframe.
  • Organize the input data and preprocessed tiles within projects/virtualstaining/tf_microDL and torch_microDL folders.
  • Organize the configs in projects/virtualstaining/tf_microDL/config_files and projects/virtualstaining/torch_microDL/config_files. Many configs are currently saved in CompMicro/software/configfiles/microDL.
  • Experiment ID should never change once assigned.
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