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Paper Figure 5. #241

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yingmuzhi opened this issue Jun 28, 2023 · 3 comments
Open

Paper Figure 5. #241

yingmuzhi opened this issue Jun 28, 2023 · 3 comments

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@yingmuzhi
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hello, the figure 5 in your paper can reflect the orientation of axon tracks in brain and it seems great. Could your please tell me how to render the picture like this? Thanks a lot.

@yingmuzhi
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I'd also like to know in the web https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD25?query=S-BIAD25# in the Experiment Name Multi-modal imaging of prenatal human brain section for model training, which said This is an uncurated dataset that contains staining artifacts, what is the meaning of this sentence and how you clear the artifacts? Thanks.

@ziw-liu
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ziw-liu commented Jun 29, 2023

Could your please tell me how to render the picture like this?

Hi and thanks for reaching out. If you are referring to the right panel, the vector field visualization is in the waveorder package. Specifically this function.

@yingmuzhi
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@ziw-liu It very nice of you, xiexie~

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