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curious what to use for describe-assembly #1

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jbh-cas opened this issue Dec 19, 2021 · 1 comment
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curious what to use for describe-assembly #1

jbh-cas opened this issue Dec 19, 2021 · 1 comment

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@jbh-cas
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jbh-cas commented Dec 19, 2021

Hello,

Your repo looks like an interesting additional usage of HiFi reads and thought I'd give it a go with some of our hifiasm created assemblies.

I was having trouble determining how to create the gap bed file via describe-assembly -g reference.fasta -B > reference.gaps.bed

I suspect this is something simple I am missing. Any insight appreciated.

best,

Jim Henderson
Research Associate, California Academy of Sciences
@jbh-cas
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jbh-cas commented Dec 20, 2021

I see it is in me-bioinf-utilities/src/
thanks

@jbh-cas jbh-cas closed this as completed Dec 20, 2021
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