Review example notebooks

[martinosorb]

• Where possible, add a wget command that downloads a publicly available dataset for analysis.
• Find reasonable values for the clustering parameters, so that the result actually looks usable. At the moment, in all the examples, the result that gets plotted is a big red blob of 1 cluster, or similar.

[mhhennig]

Great idea, I'll do that for biocam and neuropixel.

• How about MEA1k and Neuroseeker?
• Is it correct that the Neuroseeker reader is actually for a converted/filtered file?
• Do we have an URL for the Visapy data?

[mhhennig]

Made a notebook for Neuropixel with data download, please check:
https://github.com/mhhennig/HS2/blob/master/notebooks/localised_spikes_clustered-neuropixel.ipynb

[martinosorb]

I cleared the notebook output and changed the download method: the problem is that the request package is not built in, would need to be pip-installed...

[mhhennig]

Great, thanks. However:
file_name = "data/neuropixelRaw.bin"
Does this work if data does not exist?

[martinosorb]

Indeed it doesn't. At the next update I'll change that.

[mhhennig]

ViSAPy notebook ready too, plz test...hell, urllib is a pain!

[mhhennig]

...and a biocam notebook ready for testing too.

[mhhennig]

Notebooks complete now. I wonder whether we should leave the images in them as it's also a nice demo, and github renders them well..?

[martinosorb]

Sorry, I didn't read them and I removed them (it messes up when merging). We can give them another run later when everything is done.

[martinosorb]

Is this done?