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microbiome · Dec 22, 2018 · aaccf72 · aaccf72
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diff --git a/R/plot_composition.R b/R/plot_composition.R
@@ -1,4 +1,4 @@
-x#' @title Taxonomic Composition Plot
+#' @title Taxonomic Composition Plot
 #' @description Plot taxon abundance for samples.
 #' @param x \code{\link{phyloseq-class}} object
 #' @param sample.sort Order samples. Various criteria are available:

diff --git a/inst/extras/build.sh b/inst/extras/build.sh
@@ -1,6 +1,6 @@
 # https://support.rstudio.com/hc/en-us/articles/200626518-Customizing-Package-Bubuiild-Options
 #/usr/bin/R CMD BATCH document.R
 /usr/bin/R CMD build ../../ --resave-data #--no-examples  --no-build-vignettes 
-/usr/bin/R CMD check microbiome_1.5.25.tar.gz #--no-build-vignettes --no-examples
-/usr/bin/R CMD BiocCheck microbiome_1.5.25.tar.gz
-/usr/bin/R CMD INSTALL microbiome_1.5.25.tar.gz 
+/usr/bin/R CMD check microbiome_1.5.26.tar.gz #--no-build-vignettes --no-examples
+/usr/bin/R CMD BiocCheck microbiome_1.5.26.tar.gz
+/usr/bin/R CMD INSTALL microbiome_1.5.26.tar.gz 
diff --git a/tests/testthat/test_merge.R b/tests/testthat/test_merge.R
@@ -13,6 +13,7 @@ test_that("Merging ok", {
 
   #x <- dietswap
   library(phyloseq)
+  data(GlobalPatterns)
   x <- GlobalPatterns
   a1 <- abundances(aggregate_taxa(x, level = "Genus"))
   a2 <- colSums(abundances(x)[which(tax_table(x)[, "Genus"] == "Dialister"), ])