• microbiome R package

    R 51 22 Updated Jul 11, 2018
  • HITChip Database functions

    R 1 Updated Jun 13, 2018
  • Database

    Updated Mar 18, 2018
  • Educational material

    R MIT Updated Feb 26, 2018
  • R 1 2 Updated Jan 10, 2018
  • Robust Probabilistic Averaging

    R 1 Updated Nov 13, 2017
  • microbiome project - home page

    HTML 1 1 Updated Nov 13, 2017
  • Tutorials

    1 Updated Jun 29, 2017
  • phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

    R 96 Updated Mar 24, 2017
  • Slides

    HTML 1 Updated Feb 6, 2017
  • Human Intestinal 16S rRNA gene reference taxonomy

    2 1 Updated Dec 29, 2016
  • Neutral model

    C 1 6 Updated Jun 1, 2016
  • R Updated Jul 6, 2015
  • Deprecated legacy version of the microbiome package without phyloseq bindings

    R Updated Jul 6, 2015
  • Shell 1 3 Updated Jun 18, 2015
  • R functions utilizing Usearch for Illumina 16S amplicon reads pre-preocessing

    R 2 1 Updated Apr 21, 2015
  • Data utilities

    BSD-2-Clause Updated Nov 19, 2013
  • D3 examples

    JavaScript Updated Oct 30, 2013
  • Development code

    R Updated May 6, 2013