microbiomedata · turbomam · Nov 17, 2023 · Nov 20, 2023
diff --git a/Makefile b/Makefile
@@ -227,7 +227,7 @@ site-clean: clean
 	rm -rf nmdc_schema/*.tsv
 	rm -rf nmdc_schema/*.yaml
 
-squeaky-clean: clean OmicsProcessing-clean accepting-legacy-ids-clean examples-clean mongodb-clean rdf-clean shuttle-clean site-clean # does not include mixs-yaml-clean
+squeaky-clean: clean OmicsProcessing-clean accepting-legacy-ids-clean examples-clean rdf-clean shuttle-clean site-clean # does not include mixs-yaml-clean
 
 project/nmdc_schema_merged.yaml:
 	$(RUN) gen-linkml \

diff --git a/assets/old_python/get_class_usages.py b/assets/old_python/get_class_usages.py
@@ -8,7 +8,7 @@
 
 import logging
 
-from nmdc_schema.get_mixs_slots import MIxSSlotsGetter
+# from nmdc_schema.get_mixs_slots import MIxSSlotsGetter
 
 logging.basicConfig(level=logging.WARNING)
 logger = logging.getLogger(__name__)

diff --git a/assets/other_mixs_yaml_files/mixs_slots_import_sheet.tsv b/assets/other_mixs_yaml_files/mixs_slots_import_sheet.tsv
diff --git a/nmdc_schema/generate_import_slots_regardless.py b/nmdc_schema/generate_import_slots_regardless.py
diff --git a/nmdc_schema/get_mixs_slots.py b/nmdc_schema/get_mixs_slots.py
diff --git a/nmdc_schema/get_mixs_slots_matching_slot_list.py b/nmdc_schema/get_mixs_slots_matching_slot_list.py
diff --git a/nmdc_schema/get_mixs_slots_used_in_schema.py b/nmdc_schema/get_mixs_slots_used_in_schema.py
diff --git a/nmdc_schema/get_slots_from_class.py b/nmdc_schema/get_slots_from_class.py
diff --git a/nmdc_schema/get_slots_from_view.py b/nmdc_schema/get_slots_from_view.py
diff --git a/nmdc_schema/test_more_tolerant_schema.py b/nmdc_schema/test_more_tolerant_schema.py
@@ -12,6 +12,6 @@ def do_test():
                        term=OntologyClass(id='ENVO:00010483', name='freshwater environment')),
                    env_local_scale=ControlledIdentifiedTermValue(
                        term=OntologyClass(id='ENVO:00010483', name='freshwater environment')),
-                   )
+                   ),
 
     print(yaml_dumper.dumps(bs))