Is it possible to construct an evolutionary tree using CDR3 information? #1140
bigcat1001
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I want to use findShmTrees to construct an evolutionary tree. However, there's a problem. Even though my library is a full-length library based on the SMARTer, I only performed PE150 sequencing. Therefore, I only have information about CDR3. Can I adjust some parameters in findAlleles, then input the new clns library into findShmTrees? I have tried the full-length scheme, but it obviously didn't succeed.
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