What are clnx files? Using clna or clns are giving error in postanalysis

[MeghnaDey98]

Documentation for running postanalysis for CDR3 metrics, diversity, V/J/VJ-usage, CDR3/V-Spectratype metrics.
(cloneset.(clns|clna)|directory)...
Paths to input clnx files or to directories with clnx files. Files in directories will not be filtered by extension.

Error: Require clnx file type, got /Output1/Sample1_L001.clna...

[mizraelson]

Hi,
Can you please share the the set of mixcr commands you used for data analysis and the software version.

[MeghnaDey98]

The documentation for Individual Postanalysis says-
mixcr postanalysis individual
--default-downsampling (|none)
--default-weight-function (||none)
[--only-productive]
[--drop-outliers]
[--chains [,...]]...
[--metadata ]
[--group ]...
[--tables <path.(tsv|csv)>]
[--preproc-tables <path.(tsv|csv)>]
[-O <key=value>]...
[--force-overwrite]
[--no-warnings]
[--verbose]
[--help]
(cloneset.(clns|clna)|directory)... result.json[.gz]

where Command line options:

(cloneset.(clns|clna)|directory)...
Paths to input clnx files or to directories with clnx files. Files in directories will not be filtered by extension.

result.json[.gz]
Path where to write postanalysis result.

--default-downsampling (|none)
Default downsampling applied to normalize the clonesets. Possible values: count-[read|TAG]-[auto|min|fixed][-], top-[read|TAG]-[], cumtop-[read|TAG]-[percent], none

--default-weight-function (||none)
Default clonotype weight function

--drop-outliers
Drop samples which are below downsampling value as computed according to specified default downsampling option.

I used the following for my BCR analysis providing the path to my Output files from mixcr analyze command.

mixcr postanalysis individual --default-downsampling count-read-auto-400 --default-weight-function none --drop-outliers --verbose /Output1/Sample1_L001.clna ... /Postanalysis

Error:
Require clnx file type, got /Output1/Sample1_L001.clna...

[MeghnaDey98]

MiXCR v4.3.2

[MeghnaDey98]

The problem got solved by removing the three dots ' ... '