Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

chimeraCheck.py #1

Open
dougwyu opened this issue Jul 23, 2017 · 0 comments
Open

chimeraCheck.py #1

dougwyu opened this issue Jul 23, 2017 · 0 comments

Comments

@dougwyu
Copy link

dougwyu commented Jul 23, 2017

Hi there,

I'm implementing DAMe in our pipeline, and i ran across this error while trying chimeraCheck.py. I ran this in the parent folder of a 3-pool folder. The error is that chimeraCheck.py cannot find 'Pool1.noChim.fasta'. I thought that chimeraCheck.py creates this file.

It's not an urgent issue because we can run chimeracheck in a different way, if we want. But i thought you might want to see this. I'm running the /shyams version of DAMe, but there's no Issues window there.

| -  folderA
    | - pool1
        | - sickle_cor_panda_A1_S1.fastq.gz
        | - Tag1_Tag1.txt
        | - ...
    | - pool2
    | - pool3

> python chimeraCheck.py -psInfo PSinfo_300test_COIA.txt -x 3 -p 3
Traceback (most recent call last):
  File "/usr/local/bin/DAMe/bin/chimeraCheck.py", line 49, in <module>
    MakeFasSeqOneLine(P, args.chim)

  File "/usr/local/bin/DAMe/bin/modules_chimeraCheck.py", line 136, in MakeFasSeqOneLine
    fasta=open("Pool%s.noChim.fasta"%(pool+1))
IOError: [Errno 2] No such file or directory: 'Pool1.noChim.fasta'
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant