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Yeah good find! Should be straightforward to fix. I'll just need to add some extra cases to readRequirementsFile(), to ensure that if -d is provided (or -c as well) inside requirements.txt, you cannot say something like mpm install -i requirements.txt -d example.
So requirements.txt with line
colorbrewer -d /matlab
:Would get rewritten as
mpm install colorbrewer -d /matlab -d /home/matlab/mpm/mpm-packages -c default
:Ignoring the path of
/matlab/colorbrewer
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