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Add CML Action to run whole workflow #132

Merged
merged 221 commits into from Aug 13, 2022
Merged

Add CML Action to run whole workflow #132

merged 221 commits into from Aug 13, 2022

Commits on Apr 8, 2022

  1. reproduce FLINT.Cloud apis

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Commits on Apr 10, 2022

  1. changed form data paths

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  2. Merge pull request #1 from radistoubalidis/reproduce 

    reproduce FLINT.Cloud apis
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Commits on Apr 11, 2022

  1. example sim report using cml

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  2. Update cml-report.yml

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  3. Update cml-report.yml

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  4. Update cml-report.yml

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  5. Update cml-report.yml

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  6. Update cml-report.yml

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  7. Update cml-report.yml

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  8. Update cml-report.yml

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  9. test if cml is setup right

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  10. Merge branch 'master' of github.com:radistoubalidis/FLINT.Cloud into … 

    …integrate_cml
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  11. add cml script

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  12. Update cml-report.yml

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  13. changed file paths to not show local directories

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  14. Merge branch 'master' of github.com:radistoubalidis/FLINT.Cloud into … 

    …integrate_cml
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  15. update cml report

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  16. setup gha script to show summary

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  17. Update cml-report.yml

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  18. Merge branch 'master' of github.com:radistoubalidis/FLINT.Cloud into … 

    …integrate_cml
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  19. setup GCBM summary

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  20. setup GCBM summary

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  21. setup GCBM summary

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  22. setup GCBM summary

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  23. setup GCBM summary

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  24. setup GCBM summary

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  25. setup GCBM summary

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  26. setup GCBM summary

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  27. setup GCBM summary

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  28. setup GCBM summary

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  29. setup GCBM summary

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  30. setup GCBM summary

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Commits on May 24, 2022

  1. Merge branch 'moja-global:master' into master

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Commits on May 25, 2022

  1. update cml_report script

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  2. update cml script

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  3. update cml script

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  4. update cml script

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  5. update cml script

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  6. update cml script

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  7. update cml script

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  8. update python script

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  9. Merge branch 'master' into integrate_cml

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  10. Update cml-report.yml

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  11. Merge branch 'master' into integrate_cml

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  12. Update cml-report.yml

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  13. Merge branch 'integrate_cml' of github.com:radistoubalidis/FLINT.Clou… 

    …d into integrate_cml
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  14. run model summary

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  15. add sim start and end dates

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Commits on Jun 1, 2022

  1. Merge branch 'moja-global:master' into master

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Commits on Jun 7, 2022

  1. Merge branch 'moja-global:master' into master

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  2. Merge branch 'moja-global:master' into integrate_cml

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  3. Merge pull request #3 from radistoubalidis/integrate_cml 

    test if cml is setup right
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Commits on Jun 23, 2022

  1. Merge branch 'moja-global:master' into master

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Commits on Jun 24, 2022

  1. Merge branch 'moja-global:master' into master

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  2. add action to create new sim

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  3. run api and get list of saved simulations

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  4. run api and get list of saved simulations

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  5. run api and get list of saved simulations

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  6. run api and get list of saved simulations

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  7. run api and get list of saved simulations

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  8. run api and get list of saved simulations

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  9. run api and get list of saved simulations

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  10. run api and get list of saved simulations

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  11. run api and get list of saved simulations

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  12. create new sim and check if it works

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  13. add script to get log files in CML action

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  14. add script to get log files in CML action

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  15. fix some paths and get log files in CML action

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  16. test if ci has docker

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  17. test curl on gcbm api

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  18. test curl on gcbm api

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  19. update curl command

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  20. add cli to api

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  21. cli instead of curl to interact with gcbm api

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  22. cli instead of curl to interact with gcbm api

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  23. Managed to retrieve logs from sim run localy

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  24. check if cURL works with api

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  25. check if cURL works with api in actions

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  26. check if cURL works with public ip

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  27. check if it works with webrequest

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  28. check if it works with webrequest

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  29. check if it works with webrequest

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  30. check right ports

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  31. test in port 5000

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  32. test ports

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  33. test ports

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  34. check if simulation runs

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  35. check if simulation runs

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  36. check if simulation runs

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  37. check if simulation runs

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  38. check if sim runs

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  39. check if sim runs

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  40. check if sim run right

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  41. check if sim run right

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  42. check if sim run right

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  43. check if sim run right

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  44. check if sim run right

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  45. check if sim run right

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  46. check if sim run right

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  47. check if sim run right

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  48. check if sim run right

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  49. check if sim run right

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  50. check if sim run right

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  51. check if sim run right

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  52. check if sim run right

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  53. check if sim run right

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  54. check if sim run right

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  55. check if sim runs using python script

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  56. check if sim runs using python script

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  57. check if sim runs using python script

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  58. check if sim runs using python script

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  59. check if sim run smoothly

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  60. check if sim runs smoothly

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  61. check if sim runs smoothly

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  62. check if sim runs using a python script

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  63. check if sim runs using moja.cli

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  64. check if sim runs using moja.cli

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  65. check if sim runs using moja.cli no tty

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  66. sim runs but zip file not found

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  67. copy output instead using docker cp instead of /download

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  68. sim runs smoothly using partially gcbm-api and moja.cli and using cml… 

    … to send a verification comment
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  69. sim runs smoothly using partially gcbm-api and moja.cli and using cml… 

    … to send a verification comment
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  70. check if sim runs with threading

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  71. check if sim runs with threading

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  72. added CompileResults repo to rest_api_gcbm

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  73. check sim with GCBM.CompileResults repo

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  74. fix typo in cml_report.yml line 104

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  75. add cml comment

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  76. check if annual_summaries.py runs properly

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  77. check if annual_summaries.py runs properly

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  78. compile results runs but cml comment cant display plot

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  79. check if total biomass plot is displayed

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  80. display sim log

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  81. display sim log

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  82. change cml-report to run on push/master and pr/master

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  83. update cml comment

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  84. update cml comment 

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  85. update cml comment 

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  86. update cml comment 

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  87. update cml comment 

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  88. update comment 

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  89. added job to upload logs as artifact 

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  90. fix typo in line 103 cml-report.yml 

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  91. check if download works 

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  92. check why curl 26 in upload 

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  93. check why curl 26 in upload 

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  94. check why curl 26 in upload 

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  95. check why curl 26 in upload 

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  96. check why curl 26 in upload 

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  97. check why curl 26 in upload 

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  98. check why curl 26 in upload 

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  99. check why curl 26 in upload 

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  100. check why curl 26 in upload 

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  101. check why curl 26 in upload 

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  102. check why curl 26 in upload 

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  103. check why curl 26 in upload 

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  104. check correct paths 

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  105. check why curl 26 in upload 

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  106. chech verbose cURL 

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  107. upload via python 

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  108. upload via python 

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  109. upload via python 

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  110. upload via python 

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  111. upload via python 

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  112. upload via python 

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  113. update cml-report 

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  114. add requests module 

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  115. new upload params check if it runs 

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  116. new upload params check if it runs 

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  117. having issues in dynamic endpoint 

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  118. remove run job on push 

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  119. apply requested changes 

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  120. unzip zDemo_Run and templates before running api 

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  121. unzip form files before building api 

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  122. add Dockerfile.cml 

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  123. update paths in compileresults call 

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  124. test run to see file structure of output 

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  125. test run to see file structure of output 

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  126. check to see if compileresults fails 

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Commits on Jun 27, 2022

  1. update paths for compiled output db in annual_summaries.py 

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  2. update cml action to run only when run-simulation label is added 

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  3. see if the label condition if contains(...) works 

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  4. see if the label condition if contains(...) works 

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  5. run action based on pr labeling 

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  6. rename templates.zip to input_tepmlates.zip

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  7. rename templates to template 

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  8. add templates to gitignore 

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  9. check for templates in rest_api_gcbm folder 

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  10. Revert "add templates to gitignore" 

    This reverts commit 4ed4a3e.
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Commits on Jul 4, 2022

  1. refactor sim name form run4 test-run 

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  2. changes docker build to docker pull in cml-report.yml line 24 

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Commits on Jul 18, 2022

  1. test changes

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  2. Merge branch 'moja-global:master' into master

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  3. Merge branch 'master' of github.com:radistoubalidis/FLINT.Cloud into … 

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  4. Merge branch 'moja-global:master' into sim_summary

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Commits on Jul 19, 2022

  1. push to old version

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  2. reduce number of threads

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  3. Merge branch 'sim_summary' of github.com:radistoubalidis/FLINT.Cloud … 

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  4. Merge branch 'moja-global:master' into master

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  5. Merge branch 'master' of github.com:radistoubalidis/FLINT.Cloud into … 

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  6. Merge branch 'moja-global:master' into sim_summary

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Commits on Jul 22, 2022

  1. Merge branch 'moja-global:master' into sim_summary

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Commits on Jul 25, 2022

  1. Merge branch 'moja-global:master' into sim_summary

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Commits on Jul 31, 2022

  1. try fixing

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Commits on Aug 4, 2022

  1. Merge branch 'moja-global:master' into sim_summary

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  2. Test CML Action with linux-demo.zip as configuration 

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  3. Test CML Action with linux-demo.zip as configuration 

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  4. Test CML Action with linux-demo.zip as configuration 

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  5. Test CML Action with linux-demo.zip as configuration 

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  6. Test CML Action with linux-demo.zip as configuration 

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  7. Test CML Action with linux-demo.zip as configuration 

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  8. Test CML Action with linux-demo.zip as configuration 

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  9. Test CML Action with linux-demo.zip as configuration 

    Signed-off-by: radis toubalidis <rtoumpalidis@gmail.com>
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    radistoubalidis committed Aug 4, 2022
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  10. Test CML Action with linux-demo.zip as configuration 

    Signed-off-by: radis toubalidis <rtoumpalidis@gmail.com>
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    radistoubalidis committed Aug 4, 2022
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  11. Test CML Action with linux-demo.zip as configuration 

    Signed-off-by: radis toubalidis <rtoumpalidis@gmail.com>
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    radistoubalidis committed Aug 4, 2022
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  12. test dataset tracking action

    @radistoubalidis
    radistoubalidis committed Aug 4, 2022
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Commits on Aug 6, 2022

  1. remove useless files

    @HarshCasper
    HarshCasper committed Aug 6, 2022
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  2. remove more useless files

    @HarshCasper
    HarshCasper committed Aug 6, 2022
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  3. after all a new workflow

    @HarshCasper
    HarshCasper committed Aug 6, 2022
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Commits on Aug 13, 2022

  1. label pr workflow

    @HarshCasper
    HarshCasper committed Aug 13, 2022
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