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PLP_design.ipynb error with pandas >=2.0.0 #1

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Sverreg opened this issue Nov 24, 2023 · 1 comment
Open

PLP_design.ipynb error with pandas >=2.0.0 #1

Sverreg opened this issue Nov 24, 2023 · 1 comment

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@Sverreg
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Sverreg commented Nov 24, 2023

Running the extract and align sequences cell produces an AttributeError: 'DataFrame' object has no attribute 'append'. As far as I can tell, the requirements specify the pandas version to >=1.1.5, and the .append function is deprecated in pandas 2.0.0. I'm not sure if the best solution is to restrict the pandas version to sub 2.0.0, or change all the instances of df.append in the code. For my use, changing the pandas requirement to pandas==1.1.5 resolved the issue.

Screenshot from 2023-11-24 15-57-26
@mgcizzu
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mgcizzu commented Dec 6, 2023

Fixed, thank you!
Now the installation forces pandas==1.1.5

@Boehmin Boehmin mentioned this issue Jan 18, 2024
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@mgcizzu @Sverreg