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Add functions to add mutations to populations. #764

Merged
merged 1 commit into from Jun 14, 2021
Merged

Add functions to add mutations to populations. #764

merged 1 commit into from Jun 14, 2021

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molpopgen
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@molpopgen molpopgen commented Jun 10, 2021 •
edited

  • Pop must have ancestry. Should this be true for new singletons? -> Yes (for now, at least)
  • If we cannot satisfy the number of descendants, error out. This will be tricky to test -> return None.
  • Allow to specify which deme the mutation is in. If -1, then any number of valid descendants will be accepted.
  • Update many of the data structures: mutations, mcounts, and mut_lookup at the very least. The tables and genomes, too.
  • Make new Python class and function
  • tests
  • doc string
  • Test error when trying to run during simulation
  • license headers in new files
  • add test of evolve forwards in time then add.
  • document that individual genetic values are not updated

@molpopgen molpopgen marked this pull request as draft June 10, 2021 19:48
@molpopgen
Add function DiploidPopulation.add_mutation.
9e519de 
Add class fwdpy11.NewMutationData.
@molpopgen molpopgen marked this pull request as ready for review June 14, 2021 13:24
@molpopgen molpopgen merged commit 1b946d4 into dev Jun 14, 2021
@molpopgen molpopgen deleted the adding_mutations branch June 14, 2021 13:24
molpopgen added a commit that referenced this pull request Jun 14, 2021
@molpopgen
Update change log (and fix missing link to #764).
c1ac7a5
molpopgen added a commit that referenced this pull request Jun 14, 2021
@molpopgen
Add copy/deepcopy semantics for DiploidPopulation (#770)
21eae98 
* Add copy/deepcopy to DiploidPopulation

* Update DiploidPopulation docstring.

* Update change log (and fix missing link to #764).
molpopgen added a commit that referenced this pull request Jul 5, 2021
@molpopgen
Add function DiploidPopulation.add_mutation. (#764)
ba446a4 
Add ability to drop mutations onto populations with existing ancestry.
molpopgen added a commit that referenced this pull request Jul 5, 2021
@molpopgen
Add copy/deepcopy semantics for DiploidPopulation (#770)
f074d9f 
* Add copy/deepcopy to DiploidPopulation

* Update DiploidPopulation docstring.

* Update change log (and fix missing link to #764).
@molpopgen molpopgen mentioned this pull request Jul 10, 2021
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@molpopgen molpopgen mentioned this pull request Aug 23, 2021
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@molpopgen molpopgen mentioned this pull request Sep 13, 2021
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@molpopgen molpopgen mentioned this pull request Oct 6, 2021
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