Draft of selective_sweep API #828
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apragsdale
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Nov 12, 2021
| pdict = { | ||
| "recregions": [fwdpy11.PoissonInterval(0, 1, 1e-1)], | ||
| # Here, 2 means that fitness is multiplicative | ||
| # over 1, 1+hs, 1+2s. |
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Should this be 1, 1+hs, 1+s or 1, 1+2hs, 1+2s, with h=0.5 meaning additive selection? (maybe I'm getting confused with how it interacts with Multiplicative(2.0)...)
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It is always 1+hs, so h changes range as scaling changes. yes, that is likely a sticking point...
| pdict = { | ||
| "recregions": [fwdpy11.PoissonInterval(0, 1, 1e-1)], | ||
| # Here, 2 means that fitness is multiplicative | ||
| # over 1, 1+hs, 1+2s. |
| # ancestry, which we can get either | ||
| # from a burn-in or from msprime. | ||
| initial_ts = msprime.sim_ancestry( | ||
| samples=500, |
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Do you want samples to equal population_size?
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I need to double-check this.
| # ancestry, which we can get either | ||
| # from a burn-in or from msprime. | ||
| initial_ts = msprime.sim_ancestry( | ||
| samples=500, |
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again, will double-check. Some of this is confusion due to the change in defaults to diploidy for sim_ancestry.
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