GARD Ingest

Ingestion of GARD into OWL and SemanticSQL.

Prerequisites

Python is a dev dependency. It's not needed to run the docker containers, but needed for local development situations / debugging.

1. Python 3.9+
2. Docker
3. Docker images
   One or both of the following, depending on if you want to run the stable build latest or dev:
   • a. docker pull obolibrary/odkfull:latest
   • b. docker pull obolibrary/odkfull:dev

Installation

Run: sh run.sh make install

Running

Run: sh run.sh make all

You may also periodically want to update the input files, which can be done via sh run.sh make update-inputs.