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Merge pull request #4426 from monarch-initiative/release_2022-02-04
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release_2022-02-04
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@nicolevasilevsky
nicolevasilevsky committed Feb 4, 2022
2 parents 5bded4d + d6be84a commit ea054e3
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242 changes: 10 additions & 232 deletions src/ontology/components/mondo-tags.owl
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69 changes: 34 additions & 35 deletions src/ontology/imports/chr_terms.txt
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Expand Up @@ -3,8 +3,10 @@ http://purl.obolibrary.org/obo/CHR_9606-chr1 ## chromosome 1 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr10
http://purl.obolibrary.org/obo/CHR_9606-chr10 ## chromosome 10 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr10p
http://purl.obolibrary.org/obo/CHR_9606-chr10p11.21-p12.31
http://purl.obolibrary.org/obo/CHR_9606-chr10q
http://purl.obolibrary.org/obo/CHR_9606-chr10q2
http://purl.obolibrary.org/obo/CHR_9606-chr10q22.3-q23.3
http://purl.obolibrary.org/obo/CHR_9606-chr10q23
http://purl.obolibrary.org/obo/CHR_9606-chr10q24
http://purl.obolibrary.org/obo/CHR_9606-chr11
Expand All @@ -13,9 +15,11 @@ http://purl.obolibrary.org/obo/CHR_9606-chr11p
http://purl.obolibrary.org/obo/CHR_9606-chr11p1
http://purl.obolibrary.org/obo/CHR_9606-chr11p13
http://purl.obolibrary.org/obo/CHR_9606-chr11p15
http://purl.obolibrary.org/obo/CHR_9606-chr11p15-p14
http://purl.obolibrary.org/obo/CHR_9606-chr11p15.4
http://purl.obolibrary.org/obo/CHR_9606-chr11q
http://purl.obolibrary.org/obo/CHR_9606-chr11q2
http://purl.obolibrary.org/obo/CHR_9606-chr11q22.2-q22.3
http://purl.obolibrary.org/obo/CHR_9606-chr11q24
http://purl.obolibrary.org/obo/CHR_9606-chr11q24.1
http://purl.obolibrary.org/obo/CHR_9606-chr12
Expand All @@ -27,6 +31,7 @@ http://purl.obolibrary.org/obo/CHR_9606-chr12p12.1
http://purl.obolibrary.org/obo/CHR_9606-chr12q
http://purl.obolibrary.org/obo/CHR_9606-chr12q1
http://purl.obolibrary.org/obo/CHR_9606-chr12q14
http://purl.obolibrary.org/obo/CHR_9606-chr12q15-q21.1
http://purl.obolibrary.org/obo/CHR_9606-chr13
http://purl.obolibrary.org/obo/CHR_9606-chr13 ## chromosome 13 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr13p
Expand All @@ -42,8 +47,11 @@ http://purl.obolibrary.org/obo/CHR_9606-chr14 ## chromosome 14 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr14q
http://purl.obolibrary.org/obo/CHR_9606-chr14q1
http://purl.obolibrary.org/obo/CHR_9606-chr14q11
http://purl.obolibrary.org/obo/CHR_9606-chr14q11-q22
http://purl.obolibrary.org/obo/CHR_9606-chr14q11.2
http://purl.obolibrary.org/obo/CHR_9606-chr14q12
http://purl.obolibrary.org/obo/CHR_9606-chr14q22-q23
http://purl.obolibrary.org/obo/CHR_9606-chr14q24.1-q24.3
http://purl.obolibrary.org/obo/CHR_9606-chr14q3
http://purl.obolibrary.org/obo/CHR_9606-chr14q32
http://purl.obolibrary.org/obo/CHR_9606-chr14q32.2
Expand All @@ -52,21 +60,26 @@ http://purl.obolibrary.org/obo/CHR_9606-chr15 ## chromosome 15 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr15q
http://purl.obolibrary.org/obo/CHR_9606-chr15q1
http://purl.obolibrary.org/obo/CHR_9606-chr15q11
http://purl.obolibrary.org/obo/CHR_9606-chr15q11-q13
http://purl.obolibrary.org/obo/CHR_9606-chr15q11.2
http://purl.obolibrary.org/obo/CHR_9606-chr15q13
http://purl.obolibrary.org/obo/CHR_9606-chr15q13.3
http://purl.obolibrary.org/obo/CHR_9606-chr15q14
http://purl.obolibrary.org/obo/CHR_9606-chr15q2
http://purl.obolibrary.org/obo/CHR_9606-chr15q24
http://purl.obolibrary.org/obo/CHR_9606-chr15q25
http://purl.obolibrary.org/obo/CHR_9606-chr15q26-qter
http://purl.obolibrary.org/obo/CHR_9606-chr16
http://purl.obolibrary.org/obo/CHR_9606-chr16 ## chromosome 16 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr16p
http://purl.obolibrary.org/obo/CHR_9606-chr16p1
http://purl.obolibrary.org/obo/CHR_9606-chr16p11
http://purl.obolibrary.org/obo/CHR_9606-chr16p11.2
http://purl.obolibrary.org/obo/CHR_9606-chr16p11.2-p12.2
http://purl.obolibrary.org/obo/CHR_9606-chr16p12
http://purl.obolibrary.org/obo/CHR_9606-chr16p12.1
http://purl.obolibrary.org/obo/CHR_9606-chr16p12.1-p12.3
http://purl.obolibrary.org/obo/CHR_9606-chr16p12.2-p11.2
http://purl.obolibrary.org/obo/CHR_9606-chr16p13
http://purl.obolibrary.org/obo/CHR_9606-chr16p13.1
http://purl.obolibrary.org/obo/CHR_9606-chr16p13.11
Expand Down Expand Up @@ -94,6 +107,7 @@ http://purl.obolibrary.org/obo/CHR_9606-chr17q2
http://purl.obolibrary.org/obo/CHR_9606-chr17q21
http://purl.obolibrary.org/obo/CHR_9606-chr17q21.3
http://purl.obolibrary.org/obo/CHR_9606-chr17q21.31
http://purl.obolibrary.org/obo/CHR_9606-chr17q23.1-q23.2
http://purl.obolibrary.org/obo/CHR_9606-chr18
http://purl.obolibrary.org/obo/CHR_9606-chr18 ## chromosome 18 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr18p
Expand All @@ -117,14 +131,17 @@ http://purl.obolibrary.org/obo/CHR_9606-chr1p2
http://purl.obolibrary.org/obo/CHR_9606-chr1p21
http://purl.obolibrary.org/obo/CHR_9606-chr1p21.3
http://purl.obolibrary.org/obo/CHR_9606-chr1p3
http://purl.obolibrary.org/obo/CHR_9606-chr1p32-p31
http://purl.obolibrary.org/obo/CHR_9606-chr1p35
http://purl.obolibrary.org/obo/CHR_9606-chr1p35.2
http://purl.obolibrary.org/obo/CHR_9606-chr1p36
http://purl.obolibrary.org/obo/CHR_9606-chr1q
http://purl.obolibrary.org/obo/CHR_9606-chr1q12-q21
http://purl.obolibrary.org/obo/CHR_9606-chr1q2
http://purl.obolibrary.org/obo/CHR_9606-chr1q21
http://purl.obolibrary.org/obo/CHR_9606-chr1q21.1
http://purl.obolibrary.org/obo/CHR_9606-chr1q4
http://purl.obolibrary.org/obo/CHR_9606-chr1q41-q42
http://purl.obolibrary.org/obo/CHR_9606-chr1q44
http://purl.obolibrary.org/obo/CHR_9606-chr2
http://purl.obolibrary.org/obo/CHR_9606-chr2 ## chromosome 2 (Human)
Expand All @@ -140,11 +157,14 @@ http://purl.obolibrary.org/obo/CHR_9606-chr20q1
http://purl.obolibrary.org/obo/CHR_9606-chr20q11
http://purl.obolibrary.org/obo/CHR_9606-chr20q11.2
http://purl.obolibrary.org/obo/CHR_9606-chr20q13
http://purl.obolibrary.org/obo/CHR_9606-chr20q13.2-q13.3
http://purl.obolibrary.org/obo/CHR_9606-chr20q13.3
http://purl.obolibrary.org/obo/CHR_9606-chr20q13.33
http://purl.obolibrary.org/obo/CHR_9606-chr21
http://purl.obolibrary.org/obo/CHR_9606-chr21 ## chromosome 21 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr21q
http://purl.obolibrary.org/obo/CHR_9606-chr21q22.11-q22.12
http://purl.obolibrary.org/obo/CHR_9606-chr21q22.13-q22.2
http://purl.obolibrary.org/obo/CHR_9606-chr22
http://purl.obolibrary.org/obo/CHR_9606-chr22 ## chromosome 22 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr22q
Expand All @@ -154,9 +174,11 @@ http://purl.obolibrary.org/obo/CHR_9606-chr22q11.2
http://purl.obolibrary.org/obo/CHR_9606-chr22q13
http://purl.obolibrary.org/obo/CHR_9606-chr2p
http://purl.obolibrary.org/obo/CHR_9606-chr2p1
http://purl.obolibrary.org/obo/CHR_9606-chr2p12-p11.2
http://purl.obolibrary.org/obo/CHR_9606-chr2p13
http://purl.obolibrary.org/obo/CHR_9606-chr2p13.2
http://purl.obolibrary.org/obo/CHR_9606-chr2p16
http://purl.obolibrary.org/obo/CHR_9606-chr2p16.1-p15
http://purl.obolibrary.org/obo/CHR_9606-chr2p16.3
http://purl.obolibrary.org/obo/CHR_9606-chr2p2
http://purl.obolibrary.org/obo/CHR_9606-chr2p21
Expand All @@ -170,6 +192,7 @@ http://purl.obolibrary.org/obo/CHR_9606-chr2q3
http://purl.obolibrary.org/obo/CHR_9606-chr2q31
http://purl.obolibrary.org/obo/CHR_9606-chr2q31.1
http://purl.obolibrary.org/obo/CHR_9606-chr2q31.2
http://purl.obolibrary.org/obo/CHR_9606-chr2q32-q33
http://purl.obolibrary.org/obo/CHR_9606-chr2q33
http://purl.obolibrary.org/obo/CHR_9606-chr2q33.1
http://purl.obolibrary.org/obo/CHR_9606-chr2q35
Expand Down Expand Up @@ -224,12 +247,16 @@ http://purl.obolibrary.org/obo/CHR_9606-chr6 ## chromosome 6 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr6p
http://purl.obolibrary.org/obo/CHR_9606-chr6p2
http://purl.obolibrary.org/obo/CHR_9606-chr6p22
http://purl.obolibrary.org/obo/CHR_9606-chr6pter-p24
http://purl.obolibrary.org/obo/CHR_9606-chr6q
http://purl.obolibrary.org/obo/CHR_9606-chr6q1
http://purl.obolibrary.org/obo/CHR_9606-chr6q11-q14
http://purl.obolibrary.org/obo/CHR_9606-chr6q16
http://purl.obolibrary.org/obo/CHR_9606-chr6q24-q25
http://purl.obolibrary.org/obo/CHR_9606-chr7
http://purl.obolibrary.org/obo/CHR_9606-chr7 ## chromosome 7 (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr7p
http://purl.obolibrary.org/obo/CHR_9606-chr7p11.2-p13
http://purl.obolibrary.org/obo/CHR_9606-chr7p2
http://purl.obolibrary.org/obo/CHR_9606-chr7p22
http://purl.obolibrary.org/obo/CHR_9606-chr7p22.1
Expand All @@ -253,6 +280,7 @@ http://purl.obolibrary.org/obo/CHR_9606-chr8p23.1
http://purl.obolibrary.org/obo/CHR_9606-chr8q
http://purl.obolibrary.org/obo/CHR_9606-chr8q1
http://purl.obolibrary.org/obo/CHR_9606-chr8q12
http://purl.obolibrary.org/obo/CHR_9606-chr8q12.1-q21.2
http://purl.obolibrary.org/obo/CHR_9606-chr8q2
http://purl.obolibrary.org/obo/CHR_9606-chr8q21
http://purl.obolibrary.org/obo/CHR_9606-chr8q21.1
Expand All @@ -272,6 +300,8 @@ http://purl.obolibrary.org/obo/CHR_9606-chr9q21
http://purl.obolibrary.org/obo/CHR_9606-chr9q22
http://purl.obolibrary.org/obo/CHR_9606-chr9q22.3
http://purl.obolibrary.org/obo/CHR_9606-chr9q3
http://purl.obolibrary.org/obo/CHR_9606-chr9q31.1-q31.3
http://purl.obolibrary.org/obo/CHR_9606-chr9q33.3-q34.11
http://purl.obolibrary.org/obo/CHR_9606-chr9q34
http://purl.obolibrary.org/obo/CHR_9606-chrM
http://purl.obolibrary.org/obo/CHR_9606-chrM ## chromosome M (Human)
Expand All @@ -280,54 +310,23 @@ http://purl.obolibrary.org/obo/CHR_9606-chrX ## chromosome X (Human)
http://purl.obolibrary.org/obo/CHR_9606-chrXp
http://purl.obolibrary.org/obo/CHR_9606-chrXp1
http://purl.obolibrary.org/obo/CHR_9606-chrXp11
http://purl.obolibrary.org/obo/CHR_9606-chrXp11.23-p11.22
http://purl.obolibrary.org/obo/CHR_9606-chrXp11.3
http://purl.obolibrary.org/obo/CHR_9606-chrXp2
http://purl.obolibrary.org/obo/CHR_9606-chrXp21
http://purl.obolibrary.org/obo/CHR_9606-chrXp22
http://purl.obolibrary.org/obo/CHR_9606-chrXp22.13-p22.2
http://purl.obolibrary.org/obo/CHR_9606-chrXp22.3
http://purl.obolibrary.org/obo/CHR_9606-chrXq
http://purl.obolibrary.org/obo/CHR_9606-chrXq12-q13.3
http://purl.obolibrary.org/obo/CHR_9606-chrXq2
http://purl.obolibrary.org/obo/CHR_9606-chrXq22
http://purl.obolibrary.org/obo/CHR_9606-chrXq22.3
http://purl.obolibrary.org/obo/CHR_9606-chrXq25
http://purl.obolibrary.org/obo/CHR_9606-chrXq26
http://purl.obolibrary.org/obo/CHR_9606-chrXq27
http://purl.obolibrary.org/obo/CHR_9606-chrXq27.2
http://purl.obolibrary.org/obo/CHR_9606-chrXq27.3-q28
http://purl.obolibrary.org/obo/CHR_9606-chrXq28
http://purl.obolibrary.org/obo/CHR_9606-chrY
http://purl.obolibrary.org/obo/CHR_9606-chrY ## chromosome Y (Human)
http://purl.obolibrary.org/obo/CHR_9606-chr10p11.21-p12.31
http://purl.obolibrary.org/obo/CHR_9606-chr10q22.3-q23.3
http://purl.obolibrary.org/obo/CHR_9606-chr11p15-p14
http://purl.obolibrary.org/obo/CHR_9606-chr11q22.2-q22.3
http://purl.obolibrary.org/obo/CHR_9606-chr12q15-q21.1
http://purl.obolibrary.org/obo/CHR_9606-chr14q11-q22
http://purl.obolibrary.org/obo/CHR_9606-chr14q22-q23
http://purl.obolibrary.org/obo/CHR_9606-chr14q24.1-q24.3
http://purl.obolibrary.org/obo/CHR_9606-chr15q11-q13
http://purl.obolibrary.org/obo/CHR_9606-chr15q26-qter
http://purl.obolibrary.org/obo/CHR_9606-chr16p11.2-p12.2
http://purl.obolibrary.org/obo/CHR_9606-chr16p12.1-p12.3
http://purl.obolibrary.org/obo/CHR_9606-chr16p12.2-p11.2
http://purl.obolibrary.org/obo/CHR_9606-chr17q23.1-q23.2
http://purl.obolibrary.org/obo/CHR_9606-chr17q23.1-q23.2
http://purl.obolibrary.org/obo/CHR_9606-chr1p32-p31
http://purl.obolibrary.org/obo/CHR_9606-chr1q12-q21
http://purl.obolibrary.org/obo/CHR_9606-chr1q41-q42
http://purl.obolibrary.org/obo/CHR_9606-chr20q13.2-q13.3
http://purl.obolibrary.org/obo/CHR_9606-chr21q22.11-q22.12
http://purl.obolibrary.org/obo/CHR_9606-chr21q22.13-q22.2
http://purl.obolibrary.org/obo/CHR_9606-chr2p12-p11.2
http://purl.obolibrary.org/obo/CHR_9606-chr2p16.1-p15
http://purl.obolibrary.org/obo/CHR_9606-chr2q32-q33
http://purl.obolibrary.org/obo/CHR_9606-chr6pter-p24
http://purl.obolibrary.org/obo/CHR_9606-chr6q11-q14
http://purl.obolibrary.org/obo/CHR_9606-chr6q24-q25
http://purl.obolibrary.org/obo/CHR_9606-chr7p11.2-p13
http://purl.obolibrary.org/obo/CHR_9606-chr8q12.1-q21.2
http://purl.obolibrary.org/obo/CHR_9606-chr9q31.1-q31.3
http://purl.obolibrary.org/obo/CHR_9606-chr9q33.3-q34.11
http://purl.obolibrary.org/obo/CHR_9606-chrXp11.23-p11.22
http://purl.obolibrary.org/obo/CHR_9606-chrXp22.13-p22.2
http://purl.obolibrary.org/obo/CHR_9606-chrXq12-q13.3
http://purl.obolibrary.org/obo/CHR_9606-chrXq27.3-q28
3 changes: 3 additions & 0 deletions src/ontology/imports/go_terms.txt
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Expand Up @@ -25,6 +25,9 @@ http://purl.obolibrary.org/obo/GO_0000789
http://purl.obolibrary.org/obo/GO_0000790
http://purl.obolibrary.org/obo/GO_0000791
http://purl.obolibrary.org/obo/GO_0000792
http://purl.obolibrary.org/obo/GO_0000803
http://purl.obolibrary.org/obo/GO_0000805
http://purl.obolibrary.org/obo/GO_0000806
http://purl.obolibrary.org/obo/GO_0000819
http://purl.obolibrary.org/obo/GO_0000820
http://purl.obolibrary.org/obo/GO_0000902
Expand Down
8 changes: 8 additions & 0 deletions src/ontology/imports/ro_terms.txt
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Expand Up @@ -1888,6 +1888,7 @@ http://purl.obolibrary.org/obo/UBERON_0004087
http://purl.obolibrary.org/obo/UBERON_0004088
http://purl.obolibrary.org/obo/UBERON_0004089
http://purl.obolibrary.org/obo/UBERON_0004099
http://purl.obolibrary.org/obo/UBERON_0004100
http://purl.obolibrary.org/obo/UBERON_0004103
http://purl.obolibrary.org/obo/UBERON_0004105
http://purl.obolibrary.org/obo/UBERON_0004108
Expand Down Expand Up @@ -4891,6 +4892,9 @@ http://purl.obolibrary.org/obo/UBERON_0037458
http://purl.obolibrary.org/obo/UBERON_0037459
http://purl.obolibrary.org/obo/UBERON_0037531
http://purl.obolibrary.org/obo/UBERON_0039168
http://purl.obolibrary.org/obo/UBERON_0039222
http://purl.obolibrary.org/obo/UBERON_0039228
http://purl.obolibrary.org/obo/UBERON_0039261
http://purl.obolibrary.org/obo/UBERON_1000004
http://purl.obolibrary.org/obo/UBERON_1000011
http://purl.obolibrary.org/obo/UBERON_1000021
Expand Down Expand Up @@ -4951,6 +4955,8 @@ http://purl.obolibrary.org/obo/UBERON_5103631
http://purl.obolibrary.org/obo/UBERON_5103635
http://purl.obolibrary.org/obo/UBERON_5106048
http://purl.obolibrary.org/obo/UBERON_5106052
http://purl.obolibrary.org/obo/UBERON_7500062
http://purl.obolibrary.org/obo/UBERON_7500094
http://purl.obolibrary.org/obo/UBERON_8000006
http://purl.obolibrary.org/obo/UBERON_8000007
http://purl.obolibrary.org/obo/UBERON_8300000
Expand Down Expand Up @@ -4993,6 +4999,8 @@ http://purl.obolibrary.org/obo/UBERON_8410050
http://purl.obolibrary.org/obo/UBERON_8410051
http://purl.obolibrary.org/obo/UBERON_8410056
http://purl.obolibrary.org/obo/UBERON_8410057
http://purl.obolibrary.org/obo/UBERON_8420000
http://purl.obolibrary.org/obo/UBERON_8440004
http://purl.obolibrary.org/obo/chebi#is_substituent_group_from
http://purl.obolibrary.org/obo/mondo#part_of_progression_of_disease
http://purl.obolibrary.org/obo/pato#has_cross_section
Expand Down

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