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new classification/modeling for infectious diseases #2950

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nicolevasilevsky opened this issue Apr 21, 2021 · 1 comment · Fixed by #3214
Closed

new classification/modeling for infectious diseases #2950

nicolevasilevsky opened this issue Apr 21, 2021 · 1 comment · Fixed by #3214
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infectious disease New term request Revise subclass
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nicolevasilevsky commented Apr 21, 2021 •
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Viral infection
logical def:
'infectious disease' and ('disease has infectious agent' some Viruses)

-Primary infection (need text def)
logical def:
'infectious disease' and ('disease has primary infectious agent' some Viruses)
Note: create new object property: 'disease has primary infectious agent'

-Latent infection (need text def)
logical def:
'infectious disease' and ('disease has latent infectious agent' some Viruses)
Note: create new object property: 'disease has latent infectious agent'

viral infectious disease or sequela
logical def:
'viral infectious disease' or 'post-viral disorder'

New hierarchy

viral disease or post-viral disorder
-viral infectious disease or sequela
--viral infectious disease
---primary viral infectious disease
----AIDS
----chickenpox
----COVID-19
---latent viral infectious disease
----herpes zoster
-----'geniculate herpes zoster'
-----'ophthalmic herpes zoster'
-----'zoster sine herpete'
-post-viral disorder (is 'sequela of viral infectious disease' equivalent to 'post-viral disorder'? If I model the logical axiom after sequela of COVID-19, then it is inferred to be equivalent)
@nicolevasilevsky nicolevasilevsky self-assigned this Apr 21, 2021
@nicolevasilevsky nicolevasilevsky added this to Highest priority in Nicole's tickets Apr 21, 2021
nicolevasilevsky added a commit that referenced this issue Apr 21, 2021
@nicolevasilevsky
attempt at new classification for viral infectious disease
a9cb9f0 
address #2950
@nicolevasilevsky nicolevasilevsky mentioned this issue Apr 21, 2021
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@nicolevasilevsky nicolevasilevsky mentioned this issue Jun 29, 2021
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related to #3142

nicolevasilevsky added a commit that referenced this issue Jul 1, 2021
@nicolevasilevsky
merge viral infectious disease or sequela
8c12b21 
with viral disease or post-viral disorder

add synonyms to parents

address #2950
@nicolevasilevsky nicolevasilevsky mentioned this issue Jul 1, 2021
Merged
@nicolevasilevsky nicolevasilevsky moved this from Highest priority to Done in Nicole's tickets Jul 1, 2021
@nicolevasilevsky nicolevasilevsky mentioned this issue Jul 1, 2021
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infectious disease New term request Revise subclass
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merge viral infectious disease or sequela monarch-initiative/mondo
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