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[Revise subclass] MONDO:0019391 fanconi anemia #7639

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ValWood opened this issue Apr 25, 2024 · 2 comments · Fixed by #7892 · May be fixed by #7876
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[Revise subclass] MONDO:0019391 fanconi anemia #7639

ValWood opened this issue Apr 25, 2024 · 2 comments · Fixed by #7892 · May be fixed by #7876
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@ValWood
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ValWood commented Apr 25, 2024

Mondo term (ID and Label)

MONDO:0019391 fanconia anemia

is a subclass of
telomere syndrome and dyostosis but it does not appear to be either of these?

Suggested revision and reasons

Your nano-attribution (ORCID)
If you don't have an ORCID, you can sign up for one here

@sagehrke
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sagehrke commented May 2, 2024

Dear @ValWood,
Thank you for reaching out to the Mondo Disease Ontology, part of the Monarch Initiative!

We have received your ticket and will review it as soon as possible.

If you have any additional information or updates relevant to your inquiry, please add them in a comment on this ticket. Your input is valuable in helping us understand and resolve the issue effectively.

Thank you for your patience and for your contributions to Mondo!

Sincerely,
The Mondo Team

@sagehrke sagehrke added the user request A request from an external user label May 2, 2024
@ValWood ValWood changed the title [Revise subclass] MONDO:0019391 fanconia anemia [Revise subclass] MONDO:0019391 fanconi anemia May 9, 2024
@yshwetar
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Fanconi Anemia is a subclass of Telomere Syndrome:

Fanconi Anemia: "Mutation of Fanconi anemia genes results in impaired double-stranded DNA repair." per https://www.ncbi.nlm.nih.gov/books/NBK559133/ PMID:32644559

Telomere Syndrome: "Although the Mendelian telomere disorders have diverse clinical presentations, they share an underlying defect of short telomere length." per https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3548426/ PMID:22965356

Though articles have investigated the similarities of a Telomere Syndrome and Fanconi Anemia (such as: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9453478/ PMID:36091172), the underlying mechanism of Telomere Syndrome is not present in Fanconi Anemia. Recommend removing the term Telomere Syndrome.

Fanconi Anemia is a subclass of Telomere Syndrome:

Fanconi Anemia appears to present as a Dysostoses by definition, however is not labeled that anywhere in my literature search. Dysostosis seems to be used to describe disorders with specific patterns of bone development. Recommend removing the term Dysotosis.

yshwetar added a commit to yshwetar/mondo that referenced this issue Jun 27, 2024
closes monarch-initiative#7639

- Removed subclass of terms 'telomere syndrome' and 'dysotosis' for fanconi anemia
yshwetar added a commit that referenced this issue Jul 1, 2024
Closes #7639

- excluded_SubclassOf Telomere Syndrome
- Added PMID:29804726 and ORCID

- excluded_SubclassOf dysostosis
- Added ORCID
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